Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABN702_RS13175 Genome accession   NZ_CP158164
Coordinates   2578088..2579902 (-) Length   604 a.a.
NCBI ID   WP_417897294.1    Uniprot ID   -
Organism   Bacillus sp. CSS-39     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2573088..2584902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN702_RS13145 (ABN702_13120) - 2573106..2573741 (-) 636 WP_417897288.1 GTP pyrophosphokinase -
  ABN702_RS13150 (ABN702_13125) - 2573757..2574125 (-) 369 WP_417897289.1 hypothetical protein -
  ABN702_RS13155 (ABN702_13130) - 2574872..2575468 (+) 597 WP_417897290.1 CYTH domain-containing protein -
  ABN702_RS13160 (ABN702_13135) - 2575479..2576120 (+) 642 WP_417897291.1 lytic transglycosylase domain-containing protein -
  ABN702_RS13165 (ABN702_13140) - 2576299..2576712 (+) 414 WP_417897292.1 globin -
  ABN702_RS13170 (ABN702_13145) - 2576702..2577571 (+) 870 WP_417897293.1 ClpXP adapter SpxH family protein -
  ABN702_RS13175 (ABN702_13150) pepF 2578088..2579902 (-) 1815 WP_417897294.1 oligoendopeptidase F Regulator
  ABN702_RS13180 (ABN702_13155) - 2580002..2581168 (-) 1167 WP_417897295.1 competence protein CoiA -
  ABN702_RS13185 (ABN702_13160) cls 2581618..2583126 (-) 1509 WP_417897296.1 cardiolipin synthase -
  ABN702_RS13190 (ABN702_13165) mecA 2583200..2583889 (-) 690 WP_417897297.1 adaptor protein MecA Regulator

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69633.92 Da        Isoelectric Point: 4.7988

>NTDB_id=1010034 ABN702_RS13175 WP_417897294.1 2578088..2579902(-) (pepF) [Bacillus sp. CSS-39]
MAEQTAVKKLQERKDISAEDTWRLEDIFSSDEAWEKEFQEVKGMIGKIQDFEGTLSKSAENLYEALQYQDSISSRLGKLY
TYAHMRYDQDTTNSFYQGLNDRATNLYTQVASALSFVVPEILTMKEEEIAKFLQEHEGLSLYKHSLDEINRQRPHVLSAK
EEALLAEASEVLSASSNTFGMLNNADLTFPSVKDENGEEVEITHGRYIRFLECENQEVRKNAFKAVYETYGKYKNTFAST
LGGTVKKDNFQAKVRNYDSARQSALSNNNIPETVYDNLVNTVNKNLHLLHRYVELRKKVLGVEELHMYDLYTPLIKDVKM
AVTYDEAKDYILKGLTPLGEEYSEILKEGFDNRWVDVQENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHFLEGFRGTVFRQTMFAEFEHKIHELAQ
SGEALTSDLLTETYYELNKKYFGDSIHIDEEIGLEWARIPHFYYNYYVYQYATGYSAATALSKQILEEGQPAVDRYLEFL
KAGSSDYPIEVLKKAGVDMTQSTPIEEACKVFEEKLKEMEELLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1010034 ABN702_RS13175 WP_417897294.1 2578088..2579902(-) (pepF) [Bacillus sp. CSS-39]
ATGGCAGAACAAACAGCCGTTAAGAAATTACAAGAACGTAAAGACATCTCTGCAGAAGATACATGGAGATTGGAAGATAT
TTTTTCGAGTGATGAAGCTTGGGAAAAGGAATTTCAGGAAGTAAAAGGGATGATCGGCAAAATACAGGACTTTGAAGGAA
CACTTTCAAAGTCTGCAGAAAACCTGTACGAAGCACTTCAGTATCAGGATTCCATCTCCAGCCGTCTAGGCAAGCTGTAT
ACATATGCTCATATGCGCTACGACCAGGATACTACGAACAGCTTTTACCAAGGATTGAATGACCGTGCAACGAACCTTTA
TACACAGGTGGCAAGCGCGTTATCATTCGTTGTACCGGAAATTTTGACGATGAAGGAAGAGGAAATAGCAAAGTTCCTTC
AGGAGCATGAAGGGCTTTCCCTTTATAAGCACTCCCTCGACGAAATTAACCGTCAACGTCCACATGTATTATCTGCAAAG
GAAGAGGCATTGCTTGCGGAAGCTTCCGAGGTGTTATCCGCCTCATCCAATACTTTCGGCATGCTTAACAATGCAGATCT
GACATTCCCGTCCGTAAAAGATGAGAATGGGGAAGAAGTGGAGATTACACACGGCCGTTATATACGTTTCCTCGAGTGCG
AGAACCAGGAAGTGAGAAAAAATGCTTTCAAAGCGGTCTACGAAACTTATGGGAAATACAAGAATACATTTGCGAGTACT
TTAGGTGGTACGGTCAAAAAAGACAATTTCCAGGCGAAGGTCCGCAATTACGATTCTGCGCGTCAATCCGCGCTGAGCAA
TAACAATATCCCTGAAACGGTGTATGACAATCTGGTCAATACGGTCAACAAGAACCTTCACTTGCTTCACCGATATGTGG
AGTTACGCAAAAAGGTGCTTGGTGTGGAAGAGCTTCATATGTATGACCTATACACTCCACTGATCAAGGATGTAAAAATG
GCTGTTACGTATGATGAAGCGAAGGATTATATCCTGAAAGGGCTGACTCCGCTTGGAGAAGAGTATTCCGAAATCTTGAA
AGAAGGCTTTGATAACAGGTGGGTGGATGTACAGGAGAACAAAGGGAAGCGCTCCGGTGCATATTCTTCCGGAACTTATG
GTACCAACCCGTATATCCTTATGAACTGGCAGGACAATGTCAATAACCTGTTCACGCTTGCACATGAGTTCGGACATTCC
GTACACAGCTACTATACAAGAAAGACTCAGCCTTATCCGTACGGAAACTATTCCATCTTTGTCGCGGAAGTGGCGTCCAC
TTGTAATGAGGCATTATTGAATGATTATCTATTGAAAACCATCGATGATGATAAGAAGCGTCTTTATTTACTAAACCACT
TCTTGGAAGGTTTCCGTGGCACTGTATTCCGCCAAACGATGTTTGCAGAATTTGAGCACAAAATCCATGAGCTTGCTCAG
AGTGGTGAGGCTCTTACATCCGACCTGTTGACAGAAACCTACTATGAGCTGAATAAGAAATATTTTGGTGACAGTATCCA
TATTGATGAGGAAATTGGTTTGGAGTGGGCAAGAATTCCTCACTTCTATTACAACTATTATGTTTATCAATATGCTACAG
GCTATAGTGCAGCCACTGCTCTAAGCAAACAGATCCTTGAAGAGGGCCAGCCTGCAGTTGACCGCTACCTTGAATTCCTG
AAAGCGGGAAGCTCGGACTATCCAATCGAGGTATTGAAAAAAGCAGGAGTGGATATGACACAATCCACCCCGATCGAAGA
AGCATGCAAAGTGTTTGAAGAGAAGCTGAAGGAAATGGAAGAGCTTCTGTCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.914

96.523

0.482

Multiple sequence alignment