Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   H0514_RS07780 Genome accession   NZ_LR822020
Coordinates   1514208..1515167 (-) Length   319 a.a.
NCBI ID   WP_179972697.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1509208..1520167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS07765 (STHERMO_1786) - 1510295..1511437 (-) 1143 WP_179972700.1 peptidyl-prolyl cis-trans isomerase -
  H0514_RS07770 (STHERMO_1787) - 1511499..1512206 (-) 708 WP_179972699.1 O-methyltransferase -
  H0514_RS07775 (STHERMO_1789) pepF 1512392..1514197 (-) 1806 WP_179972698.1 oligoendopeptidase F Regulator
  H0514_RS07780 (STHERMO_1790) coiA 1514208..1515167 (-) 960 WP_179972697.1 competence protein CoiA Machinery gene
  H0514_RS07785 (STHERMO_1795) - 1516470..1517366 (+) 897 WP_179972696.1 LysR family transcriptional regulator -
  H0514_RS07790 (STHERMO_1796) metG 1517644..1519647 (-) 2004 WP_179972695.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38062.13 Da        Isoelectric Point: 9.1687

>NTDB_id=1009993 H0514_RS07780 WP_179972697.1 1514208..1515167(-) (coiA) [Streptococcus thermophilus isolate STH_CIRM_956]
MLIAKNQKGLLVSALENGLNREEIYRCPGCQGIVLLRQGKVLCPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGKELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKQGFVQIRLSIDGFEKLFMQYYRKMDFSYKQTLCPPIFYAKIVEYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1009993 H0514_RS07780 WP_179972697.1 1514208..1515167(-) (coiA) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAATTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTATTATGCCCACATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAACGAATCGGCCCAACATTTATCCCTAAAAGCCACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAAATTGCGGATTTATTCGTTGGAGATTCCTTAGCTTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTACGAT
GGCTTTTGGGGAAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAGGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCAGAGTCTAAGCAAGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTTATGCAGTATTATC
GAAAAATGGATTTTTCTTATAAGCAAACCCTGTGCCCTCCCATCTTTTATGCTAAAATAGTAGAGTATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

45.659

97.492

0.445
  coiA Streptococcus pneumoniae TIGR4

45.016

97.492

0.439
  coiA Streptococcus pneumoniae Rx1

44.695

97.492

0.436
  coiA Streptococcus pneumoniae D39

44.695

97.492

0.436
  coiA Streptococcus pneumoniae R6

44.695

97.492

0.436

Multiple sequence alignment