Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   H0514_RS03040 Genome accession   NZ_LR822020
Coordinates   581337..582830 (+) Length   497 a.a.
NCBI ID   WP_164135541.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_956     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 576337..587830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0514_RS03010 (STHERMO_0676) - 576577..577770 (-) 1194 WP_100262689.1 OFA family MFS transporter -
  H0514_RS11130 (STHERMO_0677) - 578119..578367 (+) 249 Protein_552 TatD family hydrolase -
  H0514_RS11135 - 578465..578875 (+) 411 Protein_553 ATP-binding cassette domain-containing protein -
  H0514_RS03030 - 578869..579059 (+) 191 Protein_554 IS3 family transposase -
  H0514_RS03035 (STHERMO_0680) amiA3 579295..581271 (+) 1977 WP_179972091.1 peptide ABC transporter substrate-binding protein Regulator
  H0514_RS03040 (STHERMO_0681) amiC 581337..582830 (+) 1494 WP_164135541.1 ABC transporter permease Regulator
  H0514_RS03045 (STHERMO_0682) amiD 582830..583756 (+) 927 WP_179972090.1 oligopeptide ABC transporter permease OppC Regulator
  H0514_RS03050 (STHERMO_0683) amiE 583766..584851 (+) 1086 WP_179972089.1 ABC transporter ATP-binding protein Regulator
  H0514_RS03055 (STHERMO_0684) - 584844..585770 (+) 927 WP_179972088.1 ATP-binding cassette domain-containing protein -
  H0514_RS03060 (STHERMO_0685) - 585823..586608 (-) 786 WP_179972087.1 ABC transporter permease -
  H0514_RS03065 (STHERMO_0686) - 586620..587318 (-) 699 WP_179972086.1 ABC transporter ATP-binding protein -
  H0514_RS03070 (STHERMO_0687) - 587323..587700 (-) 378 WP_011226300.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55816.60 Da        Isoelectric Point: 10.0391

>NTDB_id=1009952 H0514_RS03040 WP_164135541.1 581337..582830(+) (amiC) [Streptococcus thermophilus isolate STH_CIRM_956]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKRISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKNRYQDPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGIL
TFLLSLPTIALVYIIRLMGSAIGLPDSFPILGAGDWRSYVLPSVILGILSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHIFKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1009952 H0514_RS03040 WP_164135541.1 581337..582830(+) (amiC) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGAAAAGATACATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACAGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCAGTTGTTGGTTCAGGAACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAGAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCCAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAATCGTTATCAGGACCCATCAATGGTGACAAGCTCTGCCATTGCTGGTTTGATTGGTTTGGTCTTGTCTT
ATGCCTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGTATCCTG
ACTTTCTTGCTTTCTCTACCGACAATTGCCTTGGTATATATCATTCGCTTGATGGGTTCTGCGATTGGTCTTCCGGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCTTATGTCTTGCCATCTGTTATTCTCGGAATCTTGTCAACTCCTGGTC
TTGCGATTTGGATCCGCCGTTACATGATTGATTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGATTGTCA
GAACAAGAAATTTCAAACAAGCACATTTTCAAGAATGCTATGGTTTCCTTGGTTTCAGGAATTCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGACTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGTCTGGTATTTATTTTTACAGCCCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

95.171

100

0.952
  amiC Streptococcus thermophilus LMD-9

94.97

100

0.95
  amiC Streptococcus thermophilus LMG 18311

94.97

100

0.95