Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ABFV67_RS05115 Genome accession   NZ_CP158116
Coordinates   1085532..1087775 (+) Length   747 a.a.
NCBI ID   WP_350006987.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1080532..1092775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS05090 (ABFV67_05090) - 1080935..1081504 (-) 570 WP_040904201.1 PilZ domain-containing protein -
  ABFV67_RS05095 (ABFV67_05095) lolC 1081723..1082931 (+) 1209 WP_217543681.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ABFV67_RS05100 (ABFV67_05100) lolD 1082924..1083610 (+) 687 WP_004394928.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ABFV67_RS05105 (ABFV67_05105) lolE 1083610..1084854 (+) 1245 WP_350006986.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ABFV67_RS05110 (ABFV67_05110) - 1085002..1085523 (-) 522 WP_040904202.1 DUF2062 domain-containing protein -
  ABFV67_RS05115 (ABFV67_05115) comEC 1085532..1087775 (+) 2244 WP_350006987.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABFV67_RS05120 (ABFV67_05120) msbA 1087808..1089556 (+) 1749 WP_154167664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ABFV67_RS05125 (ABFV67_05125) lpxK 1089560..1090567 (+) 1008 WP_350006988.1 tetraacyldisaccharide 4'-kinase -
  ABFV67_RS05130 (ABFV67_05130) - 1090548..1090727 (+) 180 WP_154167670.1 Trm112 family protein -
  ABFV67_RS05135 (ABFV67_05135) kdsB 1090727..1091473 (+) 747 WP_186463294.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83997.17 Da        Isoelectric Point: 9.5139

>NTDB_id=1009817 ABFV67_RS05115 WP_350006987.1 1085532..1087775(+) (comEC) [Vibrio metschnikovii strain IS021]
MALLSNYWTLASFSLTILSAPFWPWMPKWPIIIGIVVVLMMSLVTRRGRGCIGITLALVLIITHGNKVTAQSNNILQFAT
DITIKGVADSFFTAHRYGFSGSFVVRSINGQSLPRFLSPTVRLNSPIALQLGDHAQFVVQVKPIYGRLNEVGFDQEAFFL
SQGWSAQATVRPNTAYQIIPSSSLRAIFFQQIEQRTRSSKVQGFILALTFGERSGITEQQWLELRNSGLIHLTAISGLHI
GMAFGFGYLLGGMCSRLLRKGLWLPFVCGGLFALGYAWLAGFTLPTQRALMMCWLNILLVMFNVRVTAIQRVLLTLAAVL
ALDPFASLSTSFWLSFLAVSFVIYQVSVIDSRWPLWKKVFAGHLLLVMLMAPVTAYFFSGVSLYSALYNLVFIPWFSFVV
VPLLFIVLCGNVLIADQVQWLWTWVEAALMPFSWSLGFAEHSWLPVNQTWQYSLLALFLVMMLRPLLTARSLIAIGLLFS
ATWLTIQPKVYWQVDMLDVGHGLAMVIERNGRYVLYDTGSSWHEGSVATSLIIPLLTRRGGLDALDGVIISHSDNDHAGG
LADIQSRLKPAWIRASYRNEHFSPCIQGEFWQWQELTFEVVWPPRLVDRADNPHSCVVRMVDKQYGHSVLLTGDVTAIGE
WLLSRDALLDSDVLVVPHHGSQTSSTQAFIEKVNPQLAIASLAKGHRWRLPHPDVLARYQSLDIPWLDTGEVGQITLRYQ
GSQRQLFTLRGGRITPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=1009817 ABFV67_RS05115 WP_350006987.1 1085532..1087775(+) (comEC) [Vibrio metschnikovii strain IS021]
ATGGCTCTCTTATCGAATTACTGGACGTTGGCTTCGTTCTCGTTAACGATACTCTCTGCCCCATTTTGGCCTTGGATGCC
CAAATGGCCTATTATCATTGGCATTGTTGTTGTGTTGATGATGAGTCTCGTGACACGCCGAGGCAGGGGATGCATCGGAA
TTACACTGGCCTTAGTGTTGATAATAACACACGGAAATAAAGTAACCGCACAGTCCAATAATATCTTACAATTTGCGACA
GATATTACCATAAAAGGTGTCGCTGACAGCTTTTTTACTGCTCATCGCTACGGTTTTAGTGGTTCTTTTGTAGTGAGATC
AATCAATGGTCAATCTTTACCCCGATTTTTGTCTCCCACGGTACGTTTAAATTCCCCGATCGCCTTACAATTGGGTGATC
ATGCTCAATTTGTGGTACAGGTGAAGCCGATTTATGGGCGATTGAATGAAGTCGGGTTTGATCAAGAAGCCTTTTTTCTG
AGTCAAGGCTGGAGCGCACAAGCGACCGTTCGTCCCAATACAGCTTATCAAATCATCCCCAGTTCAAGTTTGCGGGCGAT
ATTTTTTCAACAGATTGAGCAACGAACGCGATCCAGCAAGGTTCAAGGCTTTATTTTAGCCCTCACTTTTGGTGAGCGTA
GCGGGATTACCGAACAGCAGTGGTTGGAATTACGCAATAGCGGTTTAATCCATCTCACGGCGATCTCAGGGTTGCACATT
GGTATGGCATTTGGTTTTGGCTATTTGTTGGGGGGGATGTGTAGCCGCCTTTTGAGAAAGGGCTTATGGCTACCTTTTGT
TTGCGGTGGATTGTTTGCACTTGGTTATGCTTGGCTGGCAGGTTTTACGCTACCGACTCAGCGAGCATTGATGATGTGTT
GGTTAAATATTCTATTAGTCATGTTTAATGTTCGAGTGACCGCTATTCAACGGGTATTATTAACGTTAGCTGCGGTATTG
GCTTTGGACCCTTTTGCTTCATTAAGCACAAGTTTCTGGTTATCTTTTTTAGCGGTCAGTTTTGTTATTTACCAAGTCTC
CGTCATCGATAGCCGATGGCCGCTATGGAAGAAAGTGTTTGCTGGTCATCTATTATTAGTGATGTTAATGGCTCCGGTGA
CGGCTTACTTCTTCTCTGGCGTTAGCCTTTATTCCGCGCTTTATAATCTCGTGTTTATTCCTTGGTTCAGCTTTGTGGTT
GTTCCCTTACTGTTTATTGTCTTGTGTGGCAATGTGTTGATCGCCGATCAAGTCCAGTGGCTTTGGACTTGGGTTGAGGC
GGCTTTAATGCCGTTTAGCTGGTCGTTAGGTTTTGCAGAACATAGCTGGTTACCGGTTAACCAAACGTGGCAATATAGTT
TGTTGGCCTTATTTTTAGTGATGATGTTACGGCCACTTTTGACCGCGCGATCTCTTATTGCGATTGGGTTACTTTTTAGC
GCGACTTGGTTAACGATACAACCGAAGGTCTACTGGCAAGTGGATATGTTGGATGTTGGACATGGCTTGGCGATGGTTAT
TGAGCGTAACGGACGTTATGTTTTATACGATACAGGGAGTAGTTGGCATGAAGGCAGCGTGGCGACATCACTGATTATTC
CATTATTAACTCGACGCGGAGGACTAGATGCCCTTGATGGCGTGATCATTAGCCATAGTGATAATGATCACGCGGGAGGA
TTAGCCGATATTCAATCGCGGCTAAAACCAGCTTGGATTCGCGCTAGTTACCGTAATGAACATTTCTCTCCGTGTATTCA
AGGTGAATTCTGGCAATGGCAAGAATTGACGTTTGAAGTCGTGTGGCCACCTCGTTTGGTTGATAGAGCGGATAACCCTC
ATTCTTGTGTAGTGCGTATGGTTGATAAGCAATATGGGCATAGTGTGTTGTTGACCGGTGATGTGACGGCGATTGGTGAG
TGGTTACTCAGTCGTGACGCGTTATTAGACAGTGATGTGTTAGTGGTTCCTCATCATGGAAGTCAAACGTCGTCTACACA
AGCGTTTATAGAAAAGGTCAATCCACAGTTGGCGATTGCTTCATTGGCGAAAGGTCATCGATGGCGATTACCTCACCCAG
ACGTTCTCGCACGTTATCAATCTTTAGACATTCCGTGGCTTGATACGGGAGAGGTCGGACAAATAACACTCCGTTACCAA
GGATCTCAACGTCAGCTTTTCACCTTACGCGGTGGGCGAATCACGCCTTGGTATAGGCAGATGCTACGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(25-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-678)

Competence protein (Competence)

(208-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

52.005

100

0.521
  comEC Vibrio campbellii strain DS40M4

41.247

100

0.416
  comEC Vibrio parahaemolyticus RIMD 2210633

41.005

100

0.415

Multiple sequence alignment