Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABFV67_RS01365 Genome accession   NZ_CP158116
Coordinates   298993..299625 (-) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio metschnikovii strain IS021     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 293993..304625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS01345 (ABFV67_01345) - 294198..295409 (+) 1212 WP_004394493.1 aspartate aminotransferase family protein -
  ABFV67_RS01350 (ABFV67_01350) astA 295507..296526 (+) 1020 WP_040903963.1 arginine N-succinyltransferase -
  ABFV67_RS01355 (ABFV67_01355) astD 296548..298008 (+) 1461 WP_332396373.1 succinylglutamate-semialdehyde dehydrogenase -
  ABFV67_RS01360 (ABFV67_01360) - 298100..298894 (+) 795 WP_004394496.1 DUF1338 domain-containing protein -
  ABFV67_RS01365 (ABFV67_01365) crp 298993..299625 (-) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABFV67_RS01370 (ABFV67_01370) - 299917..300786 (-) 870 WP_004394498.1 phosphoribulokinase -
  ABFV67_RS01375 (ABFV67_01375) - 300882..301091 (-) 210 WP_004394499.1 YheU family protein -
  ABFV67_RS01380 (ABFV67_01380) - 301162..302130 (-) 969 WP_332396372.1 hydrolase -
  ABFV67_RS01385 (ABFV67_01385) - 302156..302626 (-) 471 WP_332396371.1 TIGR02444 family protein -
  ABFV67_RS01390 (ABFV67_01390) - 302626..304545 (-) 1920 WP_154170014.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=1009811 ABFV67_RS01365 WP_004394497.1 298993..299625(-) (crp) [Vibrio metschnikovii strain IS021]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1009811 ABFV67_RS01365 WP_004394497.1 298993..299625(-) (crp) [Vibrio metschnikovii strain IS021]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTCCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCATGCGGGCGAAAAAGCGGAAACCTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ACGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGATTTCATCGGCGAGCTTGGTCTGTTCGAAGAAGAT
CAAGAACGTACCGCTTGGGTTCGAGCTAAATCCCCTTGTGAAGTCGCGGAAATTTCTTTTAAGAAGTTCCGTCAATTGAT
TCAAGTTAACCCCGATATCCTGATGCGTCTATCAGGGCAAATGGCTCGTCGCCTACAAGTAACCAGCCAAAAAGTCGGTG
ATTTGGCGTTCCTTGATGTGACTGGTCGTATTGCACAAACTCTACTAAACCTAGCAAAACAACCCGATGCAATGACTCAC
CCTGATGGGATGCAAATCAAAATCACTCGTCAAGAAATTGGTCAAATCGTTGGTTGCTCTCGTGAAACCGTTGGCCGGAT
TCTGAAAATGCTTGAAGAGCAAAATCTGATATCAGCACACGGTAAAACCATCGTGGTCTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment