Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ABFV67_RS01280 | Genome accession | NZ_CP158116 |
| Coordinates | 281646..282239 (+) | Length | 197 a.a. |
| NCBI ID | WP_158144634.1 | Uniprot ID | - |
| Organism | Vibrio metschnikovii strain IS021 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 276646..287239
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFV67_RS01265 (ABFV67_01265) | oxyR | 277074..277973 (+) | 900 | WP_004394478.1 | DNA-binding transcriptional regulator OxyR | - |
| ABFV67_RS01270 (ABFV67_01270) | - | 278027..280507 (-) | 2481 | WP_110167722.1 | PBP1A family penicillin-binding protein | - |
| ABFV67_RS01275 (ABFV67_01275) | pilM | 280649..281656 (+) | 1008 | WP_154169995.1 | type IV pilus assembly protein PilM | Machinery gene |
| ABFV67_RS01280 (ABFV67_01280) | pilN | 281646..282239 (+) | 594 | WP_158144634.1 | PilN domain-containing protein | Machinery gene |
| ABFV67_RS01285 (ABFV67_01285) | pilO | 282232..282822 (+) | 591 | WP_154169997.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ABFV67_RS01290 (ABFV67_01290) | pilP | 282812..283333 (+) | 522 | WP_040903953.1 | pilus assembly protein PilP | Machinery gene |
| ABFV67_RS01295 (ABFV67_01295) | pilQ | 283358..285079 (+) | 1722 | WP_332396398.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| ABFV67_RS01300 (ABFV67_01300) | aroK | 285266..285784 (+) | 519 | WP_040903956.1 | shikimate kinase AroK | - |
| ABFV67_RS01305 (ABFV67_01305) | aroB | 285813..286898 (+) | 1086 | WP_004394485.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 22574.90 Da Isoelectric Point: 9.8478
>NTDB_id=1009807 ABFV67_RS01280 WP_158144634.1 281646..282239(+) (pilN) [Vibrio metschnikovii strain IS021]
MLHSINLFPWREAQRADHKRRFLQLMSLGVLVALLMQWGAGHYLDQQQQYQQARLDFLNQHLQQLDQRLRALKMTEAEHQ
ALQARLSVVESLQQKRNKTTQLMNLMPELIPEGVYVDKISMKGDAVEVSGISDSTARLATMLDKLERSPHLSAVGMHSIV
AGNQRFNKDFQSFKVSFHFHTAQPGLEALIRQGEHHG
MLHSINLFPWREAQRADHKRRFLQLMSLGVLVALLMQWGAGHYLDQQQQYQQARLDFLNQHLQQLDQRLRALKMTEAEHQ
ALQARLSVVESLQQKRNKTTQLMNLMPELIPEGVYVDKISMKGDAVEVSGISDSTARLATMLDKLERSPHLSAVGMHSIV
AGNQRFNKDFQSFKVSFHFHTAQPGLEALIRQGEHHG
Nucleotide
Download Length: 594 bp
>NTDB_id=1009807 ABFV67_RS01280 WP_158144634.1 281646..282239(+) (pilN) [Vibrio metschnikovii strain IS021]
ATGTTGCATAGTATCAATTTATTCCCTTGGCGAGAGGCGCAGCGTGCTGATCATAAACGGCGCTTTCTCCAGCTTATGAG
TCTTGGTGTCTTAGTCGCTTTGCTCATGCAATGGGGTGCCGGCCATTACCTTGATCAGCAACAACAGTACCAACAGGCAC
GATTAGATTTTTTGAATCAGCATCTTCAGCAACTGGATCAGCGATTACGGGCGCTCAAAATGACCGAAGCTGAGCATCAA
GCACTGCAAGCCCGGCTCAGTGTTGTTGAGTCCTTACAGCAAAAGCGCAATAAAACCACACAATTGATGAACTTGATGCC
AGAGTTGATTCCTGAAGGGGTTTACGTCGACAAAATTAGTATGAAGGGGGATGCGGTCGAAGTCAGCGGGATTAGCGATA
GTACCGCACGCTTAGCCACCATGTTAGATAAATTAGAAAGGTCACCACACTTATCAGCAGTAGGCATGCACTCGATTGTC
GCTGGGAATCAGCGTTTTAATAAAGATTTTCAGAGTTTTAAGGTCTCTTTTCATTTTCATACTGCTCAACCAGGATTAGA
GGCGTTGATTCGGCAAGGTGAACATCATGGCTAA
ATGTTGCATAGTATCAATTTATTCCCTTGGCGAGAGGCGCAGCGTGCTGATCATAAACGGCGCTTTCTCCAGCTTATGAG
TCTTGGTGTCTTAGTCGCTTTGCTCATGCAATGGGGTGCCGGCCATTACCTTGATCAGCAACAACAGTACCAACAGGCAC
GATTAGATTTTTTGAATCAGCATCTTCAGCAACTGGATCAGCGATTACGGGCGCTCAAAATGACCGAAGCTGAGCATCAA
GCACTGCAAGCCCGGCTCAGTGTTGTTGAGTCCTTACAGCAAAAGCGCAATAAAACCACACAATTGATGAACTTGATGCC
AGAGTTGATTCCTGAAGGGGTTTACGTCGACAAAATTAGTATGAAGGGGGATGCGGTCGAAGTCAGCGGGATTAGCGATA
GTACCGCACGCTTAGCCACCATGTTAGATAAATTAGAAAGGTCACCACACTTATCAGCAGTAGGCATGCACTCGATTGTC
GCTGGGAATCAGCGTTTTAATAAAGATTTTCAGAGTTTTAAGGTCTCTTTTCATTTTCATACTGCTCAACCAGGATTAGA
GGCGTTGATTCGGCAAGGTGAACATCATGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
60.406 |
100 |
0.604 |
| pilN | Vibrio campbellii strain DS40M4 |
55.838 |
100 |
0.558 |