Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ABN020_RS08075 Genome accession   NZ_CP158110
Coordinates   1690643..1692454 (+) Length   603 a.a.
NCBI ID   WP_349935249.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685643..1697454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN020_RS08055 (ABN020_08050) - 1685909..1686565 (-) 657 WP_349935247.1 sortase -
  ABN020_RS08060 (ABN020_08055) - 1686646..1687629 (-) 984 WP_291015654.1 Na/Pi symporter -
  ABN020_RS08065 (ABN020_08060) - 1687832..1688338 (+) 507 WP_338428263.1 MarR family transcriptional regulator -
  ABN020_RS08070 (ABN020_08065) - 1688335..1690641 (+) 2307 WP_349935248.1 ABC transporter ATP-binding protein -
  ABN020_RS08075 (ABN020_08070) rcrQ 1690643..1692454 (+) 1812 WP_349935249.1 ABC transporter ATP-binding protein Regulator
  ABN020_RS08080 (ABN020_08075) - 1692658..1693581 (-) 924 WP_349935250.1 LysR family transcriptional regulator -
  ABN020_RS08085 (ABN020_08080) - 1693756..1695786 (+) 2031 WP_349935251.1 FAD-binding protein -
  ABN020_RS08090 (ABN020_08085) - 1695988..1696908 (+) 921 WP_349935252.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66765.13 Da        Isoelectric Point: 6.6208

>NTDB_id=1009740 ABN020_RS08075 WP_349935249.1 1690643..1692454(+) (rcrQ) [Faecalibacterium prausnitzii strain 6]
MPRPGRMTTERAKDFKGTLLQLVRTLGRYRLSLVTAIVFAILSTIFNIAGPKVLAKATTALATGWIAKLRGTGSIDFVYI
GRILLFLLGMYLLSSAFSFIQGWLMTGLSQKVCYDFRKQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSIT
QLITSVTTMIGVLVMMLSISPKMTLIALLILPVSLVLVLIVVKFSQKYFKAQQAILGVVNGQVEEVYSGHNVVKAFNREA
VVLNDFNAANDKLYESAWKSQFLSGLMMPIMNFVGNLGYVAVAIVGSIFAANGTITIGDIQAFIQYVKNFTQPIQQLSQV
SNMLQSMAAAAERVFEFLNEPEEDQQADPARRADPGCINGQVTFSHVRFGYTPDKTVIHDFSCEVKPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDVRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARTILADNRILILDEATSSVDTRTEQRIQTAMDRLMEGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVE

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1009740 ABN020_RS08075 WP_349935249.1 1690643..1692454(+) (rcrQ) [Faecalibacterium prausnitzii strain 6]
ATGCCAAGACCCGGACGCATGACGACCGAACGCGCCAAGGACTTCAAGGGCACCCTGCTGCAGCTTGTGCGCACCCTTGG
CCGCTACCGCCTTTCGCTCGTTACCGCCATTGTATTTGCCATTCTTTCTACCATCTTCAACATTGCAGGTCCCAAGGTGC
TGGCAAAGGCCACCACGGCTCTTGCCACCGGCTGGATCGCCAAGCTGCGCGGCACCGGCAGCATCGACTTTGTGTATATC
GGCCGCATCCTGCTGTTTTTGCTGGGCATGTACCTGCTGAGCAGCGCCTTCAGCTTTATTCAGGGCTGGCTCATGACCGG
CCTTTCCCAGAAAGTCTGCTACGACTTCCGCAAGCAGATCAGCGAAAAGATCAACCGCCTGCCCCTTGCCTACTTTGAAA
AGCGCACCGTGGGCGAGGTGCTGTCCCGCATCACCAACGATGTGGACACGCTGGGCCAGAGCCTGAACCAGAGCATCACC
CAGCTCATCACCAGTGTGACCACCATGATCGGCGTGCTGGTCATGATGCTGTCCATCAGCCCGAAGATGACCCTGATCGC
CCTGCTGATCCTGCCGGTCTCGCTGGTGCTGGTGCTCATCGTGGTCAAGTTCAGCCAGAAATACTTCAAGGCACAGCAGG
CCATTCTGGGCGTTGTGAACGGTCAGGTGGAAGAAGTCTACTCCGGCCACAACGTGGTCAAAGCCTTCAACCGTGAGGCC
GTGGTGCTGAACGACTTCAACGCCGCCAACGATAAGCTGTACGAATCCGCATGGAAGAGCCAGTTTCTCTCCGGCCTGAT
GATGCCCATTATGAACTTTGTGGGCAATCTGGGCTACGTGGCAGTGGCCATCGTGGGCAGCATTTTTGCGGCAAACGGCA
CCATTACCATCGGTGACATTCAGGCCTTCATCCAGTACGTCAAGAACTTCACCCAGCCCATCCAGCAGCTTTCTCAGGTG
TCCAACATGCTGCAGAGCATGGCCGCTGCCGCTGAGCGGGTGTTCGAGTTTCTGAACGAGCCGGAAGAGGATCAGCAGGC
AGACCCGGCCCGCCGGGCCGACCCCGGCTGCATCAACGGTCAGGTGACATTCAGCCATGTCCGCTTCGGCTACACCCCGG
ACAAGACCGTCATCCACGATTTCAGCTGCGAGGTCAAGCCCGGCCAGAAGGTGGCTATCGTCGGCCCTACCGGCGCGGGC
AAAACTACCATGGTCAAGCTGCTCATGCGCTTCTATGATGTGGATTCCGGTTCCATCACCCTGAATGGCCACGATGTGCG
TGACTTTGACCGCAGCGCTCTGCGTGAGGGCTTCGGCATGGTGCTGCAGGACACATGGCTGTTCAAGGGCACCATCATGG
AGAACATCCGCTATGGCCGTCTAGATGCTACCGACGAAGAAGTGATCGCCGCCGCTAAGGCTGCCAACGCTGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAAGACGCTTCCAACGTGAGTCAGGGCCAGAAGCAGCTGCT
CACCATCGCCCGCACCATTCTGGCCGACAACCGCATCCTGATTTTGGACGAGGCCACCAGCAGTGTGGATACCCGTACCG
AGCAGCGCATCCAGACCGCCATGGACCGCCTGATGGAGGGCCGCACCAGCTTTGTGATTGCACACCGTCTTTCCACCATC
CGGGACGCCGACCTCATCCTTGTGATGCGAGATGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTGATCGAAGCAGG
CGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGAGGACGTGGTGGAGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(34-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.937

97.347

0.496

Multiple sequence alignment