Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   D934_RS09670 Genome accession   NZ_CP006696
Coordinates   2066590..2067279 (-) Length   229 a.a.
NCBI ID   WP_011097770.1    Uniprot ID   B2IAF1
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2061590..2072279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS09645 (D934_10340) - 2062718..2063179 (-) 462 WP_020852406.1 glycine zipper 2TM domain-containing protein -
  D934_RS09650 (D934_10345) - 2063946..2064743 (+) 798 WP_024748979.1 tRNA threonylcarbamoyladenosine dehydratase -
  D934_RS09660 (D934_10355) - 2065410..2065598 (-) 189 WP_225621605.1 hypothetical protein -
  D934_RS09665 (D934_10360) - 2065628..2065807 (-) 180 WP_230577787.1 Blp family class II bacteriocin -
  D934_RS13900 - 2065994..2066188 (-) 195 WP_230577788.1 hypothetical protein -
  D934_RS09670 (D934_10365) crp 2066590..2067279 (-) 690 WP_011097770.1 cAMP-activated global transcriptional regulator CRP Regulator
  D934_RS09675 (D934_10370) speD 2067422..2068216 (+) 795 WP_004083667.1 adenosylmethionine decarboxylase -
  D934_RS09680 (D934_10375) coq7 2068386..2069039 (-) 654 WP_024748672.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  D934_RS09685 (D934_10380) rplM 2069260..2069688 (+) 429 WP_004083669.1 50S ribosomal protein L13 -
  D934_RS09690 (D934_10385) rpsI 2069693..2070085 (+) 393 WP_004083670.1 30S ribosomal protein S9 -
  D934_RS09695 (D934_10390) - 2070302..2071591 (-) 1290 WP_020852302.1 citrate synthase -
  D934_RS09700 (D934_10395) - 2071818..2072060 (-) 243 WP_020852301.1 type B 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25511.27 Da        Isoelectric Point: 9.6366

>NTDB_id=100956 D934_RS09670 WP_011097770.1 2066590..2067279(-) (crp) [Xylella fastidiosa subsp. sandyi Ann-1]
MTIGNTTSVTTVRNATPPLALDNAAIERFLAHSHRRRYPNRTDVFRPGDPAGTLYYVISGSISIIAEEDDHRELVLGYFG
AGEFVGEMGLFIESDAREVILRTRTQCELAEVSYERLHQLLQGSLASDAPRILYAIGMQLSKRLLLTTRKASRLAFLDVG
DRILRTLHDLARDPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLYGTR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=100956 D934_RS09670 WP_011097770.1 2066590..2067279(-) (crp) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGACTATAGGGAACACTACGAGTGTGACAACGGTACGTAACGCTACTCCGCCTTTAGCTCTCGACAATGCGGCGATCGA
GCGCTTCTTGGCTCACAGTCATCGACGCCGCTACCCCAACCGAACGGATGTGTTTAGGCCTGGTGATCCTGCTGGAACCC
TTTACTATGTTATCAGCGGGTCGATCAGTATCATTGCGGAGGAAGACGATCATCGTGAGCTGGTTCTTGGCTATTTCGGA
GCAGGTGAGTTTGTGGGTGAGATGGGTTTATTCATCGAATCCGATGCTCGTGAAGTCATCTTACGTACCCGGACTCAGTG
TGAATTGGCTGAGGTAAGTTACGAGCGCCTGCACCAATTGTTGCAAGGCAGTTTAGCGAGTGATGCGCCGCGGATTTTGT
ATGCGATAGGTATGCAGTTATCTAAGCGTTTATTGCTTACTACCCGTAAGGCGAGTCGTCTGGCTTTTCTGGATGTGGGG
GATCGGATCTTGCGCACCTTACATGATCTGGCTCGCGATCCAGAGGCAATGAGTCATCCTCAGGGTACACAGTTGAGGGT
GTCACGTCAGGAGCTTGCGCGTCTGGTTGGATGCTCGCGTGAAATGGCTGGACGTGTGCTTAAGAAGTTGCAAGCGGATG
GTCTGTTACATGCGCGCGGCAAAACCGTTGTTCTGTACGGAACGCGTTGA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(35-122)

Bacterial regulatory proteins, crp family (Crp)

(185-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2IAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

45.411

90.393

0.41
  crp Acinetobacter baumannii D1279779

45.588

89.083

0.406
  crp Vibrio cholerae strain A1552

42.995

90.393

0.389