Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   D934_RS08235 Genome accession   NZ_CP006696
Coordinates   1765500..1767413 (+) Length   637 a.a.
NCBI ID   WP_038274677.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. sandyi Ann-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1760500..1772413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D934_RS08215 (D934_08795) - 1762584..1763643 (+) 1060 Protein_1619 type IV pilus biogenesis protein PilM -
  D934_RS08220 (D934_08800) - 1763643..1764221 (+) 579 Protein_1620 PilN domain-containing protein -
  D934_RS08225 (D934_08805) - 1764305..1764973 (+) 669 WP_004089909.1 type 4a pilus biogenesis protein PilO -
  D934_RS08230 (D934_08810) - 1764970..1765500 (+) 531 WP_011098214.1 pilus assembly protein PilP -
  D934_RS08235 (D934_08815) comQ/pilQ 1765500..1767413 (+) 1914 WP_038274677.1 type IV pilus secretin PilQ Machinery gene
  D934_RS08240 (D934_08820) - 1768808..1769566 (+) 759 WP_020852112.1 phosphatase PAP2 family protein -
  D934_RS08245 (D934_08825) - 1769602..1771221 (+) 1620 WP_230577895.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 637 a.a.        Molecular weight: 68887.83 Da        Isoelectric Point: 8.0990

>NTDB_id=100948 D934_RS08235 WP_038274677.1 1765500..1767413(+) (comQ/pilQ) [Xylella fastidiosa subsp. sandyi Ann-1]
MIDLRDSMMTLFEVLGLRFFRRIASVRVCAIWVCMAFAWCCIVGTVSAENKQAIPVPKVANAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGTVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDENVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSHVTTADSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVT
ANQREGYIKQGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLN
KREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1914 bp        

>NTDB_id=100948 D934_RS08235 WP_038274677.1 1765500..1767413(+) (comQ/pilQ) [Xylella fastidiosa subsp. sandyi Ann-1]
ATGATTGATTTAAGGGATAGTATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTTTTAGGCGTATAGCCTCGGTCCG
CGTATGTGCAATTTGGGTATGCATGGCTTTCGCTTGGTGTTGCATCGTAGGGACGGTGTCGGCTGAAAACAAGCAAGCAA
TTCCAGTGCCTAAAGTTGCCAATGCGCCACTAAGCGTTTCCAAGATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGGGCCACTCCTGACCTGCGTACGCAGGGTGGCACCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTGTTGCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGCTGCCATGGGTGGGGCGATTACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTCCGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAATCTCAATATTGTTGCTTCCGACACTGTGCAAGGCAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAACGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCACTGACAGAAGCCAAAGGTATGGGTGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGTGATATTCCCAAGAAAGTCGCGCAAATGCGTACTCTCATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTCGGTGTTGGTGCT
GCTAGTCGTTTCAGCGATAACACTGCAACGATCGGTAGTCACGTCACTACTGCTGATAGCTCCACATCGGCTACGCGGGG
GCTTAATGTTGACTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTA
AATTTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACT
GCAAACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGGTCA
AGCCACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGT
TTCTCAACATGACTGTCAAGAAGGACGAGATCGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAAC
AAGCGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATTGGTGGTGTATATGAGTTTTCCGACCG
TAATAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAAC
AAAAGGCCGAGCTTTTGATTTTCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCAGTGCATTGA

Domains

Predicted by InterProScan.

Secretin and TonB N terminus short domain (STN)

(222-268)

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)

Bacterial type II and III secretion system protein (Secretin)

(463-628)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

40.236

93.25

0.375
  pilQ Acinetobacter baumannii strain A118

37.869

95.761

0.363
  pilQ Acinetobacter baumannii D1279779

37.869

95.761

0.363

Multiple sequence alignment