Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABJ384_RS09035 Genome accession   NZ_CP157981
Coordinates   1824275..1824982 (+) Length   235 a.a.
NCBI ID   WP_349926875.1    Uniprot ID   A0AAU7SUC8
Organism   Acinetobacter sp. A1-4-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819275..1829982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS09025 (ABJ384_09015) clpB 1820669..1823251 (-) 2583 WP_349926874.1 ATP-dependent chaperone ClpB -
  ABJ384_RS09030 (ABJ384_09020) - 1823705..1824127 (-) 423 WP_166166676.1 OsmC family protein -
  ABJ384_RS09035 (ABJ384_09025) crp 1824275..1824982 (+) 708 WP_349926875.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABJ384_RS09040 (ABJ384_09030) - 1825167..1826216 (+) 1050 WP_349926877.1 NADP(H)-dependent aldo-keto reductase -
  ABJ384_RS09045 (ABJ384_09035) - 1826408..1827184 (-) 777 WP_166166685.1 M48 family metallopeptidase -
  ABJ384_RS09050 (ABJ384_09040) - 1827298..1827606 (-) 309 WP_166166688.1 hypothetical protein -
  ABJ384_RS09055 (ABJ384_09045) - 1827797..1829116 (-) 1320 WP_349926878.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26317.81 Da        Isoelectric Point: 4.5965

>NTDB_id=1009477 ABJ384_RS09035 WP_349926875.1 1824275..1824982(+) (crp) [Acinetobacter sp. A1-4-2]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTAIVDAGSESKSLYLILKGSVSIILREDDDREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIQTDGKAILIYDGSAEDSNAALEDEDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1009477 ABJ384_RS09035 WP_349926875.1 1824275..1824982(+) (crp) [Acinetobacter sp. A1-4-2]
ATGACTTCAAACTTTTCACAACTTAGCACTGATGCGCTGTCTCCTGGTCAACTCCCTGAGTCAGTAAAAGCATTATTAAA
ACGTGCATATATAAATCGTTATCCAAAACGCACTGCAATTGTAGATGCAGGCTCAGAATCAAAATCGCTTTATTTGATTT
TAAAAGGTTCGGTATCCATTATTTTACGTGAAGATGATGATCGTGAAATTGTGGTTGCCTATTTGAATGCTGGAGACTTT
TTTGGGGAAATGGGTCTTTTTGAAGCAAATCCACAACGTACTGCAGAAGTTCGTACACGCGACGTATGTGAAATTGCCGA
AATCACCTATGAAAACTTCCACGAATTAAGCAAACAGTATCCAGACCTGAGCTATGCCGTATTTGCCCAGCTTGTACGTC
GCTTAAAAAATACCACTCGTAAAGTCACTGACCTGGCATTTATTGATGTATCTGGCCGTATTGCACGCTGCCTGATTGAC
CTGTCTTCTCAACCAGAAGCCATGATTTTACCGAATGGACGTCAAATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
TGGTTGTTCCCGTGAAATGGTCGGTCGTGTCCTCAAAACACTGGAAGAACAAGGCATGATCCAGACTGATGGTAAAGCCA
TCCTGATTTATGATGGTTCTGCTGAAGATAGCAATGCAGCTTTAGAAGACGAGGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.064

100

0.911
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.187

82.128

0.396

Multiple sequence alignment