Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   H0505_RS00350 Genome accession   NZ_LR822012
Coordinates   61538..62128 (+) Length   196 a.a.
NCBI ID   WP_084829275.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 56538..67128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS10020 - 57668..58123 (-) 456 Protein_44 DUF3021 domain-containing protein -
  H0505_RS00330 (STHERMO_0060) - 58120..58511 (-) 392 Protein_45 LytTR family DNA-binding domain-containing protein -
  H0505_RS00335 (STHERMO_0061) - 58735..59040 (+) 306 WP_014621013.1 hypothetical protein -
  H0505_RS00340 (STHERMO_0062) hexB 59092..61035 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  H0505_RS00345 (STHERMO_0063) - 61165..61386 (+) 222 WP_002949052.1 hypothetical protein -
  H0505_RS00350 (STHERMO_0064) ruvA 61538..62128 (+) 591 WP_084829275.1 Holliday junction branch migration protein RuvA Machinery gene
  H0505_RS00355 (STHERMO_0065) - 62135..62689 (+) 555 WP_011225284.1 DNA-3-methyladenine glycosylase I -
  H0505_RS00360 (STHERMO_0066) cinA 62785..64056 (+) 1272 WP_084829277.1 competence/damage-inducible protein A Machinery gene
  H0505_RS00365 (STHERMO_0067) recA 64092..65231 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  H0505_RS00370 (STHERMO_0068) spx 65408..65806 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21700.03 Da        Isoelectric Point: 5.6668

>NTDB_id=1009299 H0505_RS00350 WP_084829275.1 61538..62128(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_30]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEKYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1009299 H0505_RS00350 WP_084829275.1 61538..62128(+) (ruvA) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGAAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.157

100

0.439

Multiple sequence alignment