Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ABK447_RS07695 Genome accession   NZ_CP157943
Coordinates   1474511..1474846 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469511..1479846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS07645 (ABK447_07635) comGC 1469744..1470010 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  ABK447_RS07650 (ABK447_07640) comGD 1470000..1470437 (+) 438 WP_043020787.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABK447_RS07655 (ABK447_07645) comGE 1470421..1470735 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  ABK447_RS07660 (ABK447_07650) comGF 1470644..1471144 (+) 501 WP_257899725.1 competence type IV pilus minor pilin ComGF -
  ABK447_RS07665 (ABK447_07655) comGG 1471145..1471522 (+) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABK447_RS07670 (ABK447_07660) - 1471579..1471758 (+) 180 WP_003153093.1 YqzE family protein -
  ABK447_RS07675 (ABK447_07665) - 1471798..1472127 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  ABK447_RS07680 (ABK447_07670) tapA 1472386..1473057 (+) 672 WP_124934997.1 amyloid fiber anchoring/assembly protein TapA -
  ABK447_RS07685 (ABK447_07675) sipW 1473029..1473613 (+) 585 WP_015240205.1 signal peptidase I SipW -
  ABK447_RS07690 (ABK447_07680) tasA 1473678..1474463 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  ABK447_RS07695 (ABK447_07685) sinR 1474511..1474846 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ABK447_RS07700 (ABK447_07690) sinI 1474880..1475053 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  ABK447_RS07705 (ABK447_07695) - 1475230..1476024 (-) 795 WP_076424968.1 YqhG family protein -
  ABK447_RS07710 (ABK447_07700) - 1476046..1477716 (-) 1671 WP_124934996.1 DEAD/DEAH box helicase -
  ABK447_RS07715 (ABK447_07705) gcvT 1478140..1479240 (+) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1009185 ABK447_RS07695 WP_003153104.1 1474511..1474846(-) (sinR) [Bacillus sp. hwrm1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1009185 ABK447_RS07695 WP_003153104.1 1474511..1474846(-) (sinR) [Bacillus sp. hwrm1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment