Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ABK447_RS07645 | Genome accession | NZ_CP157943 |
| Coordinates | 1469744..1470010 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus sp. hwrm1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1464744..1475010
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABK447_RS07625 (ABK447_07615) | - | 1465012..1466313 (-) | 1302 | WP_021494315.1 | hemolysin family protein | - |
| ABK447_RS07630 (ABK447_07620) | - | 1466459..1467409 (+) | 951 | WP_007408319.1 | magnesium transporter CorA family protein | - |
| ABK447_RS07635 (ABK447_07625) | comGA | 1467603..1468673 (+) | 1071 | WP_003153083.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABK447_RS07640 (ABK447_07630) | comGB | 1468660..1469697 (+) | 1038 | WP_094031834.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| ABK447_RS07645 (ABK447_07635) | comGC | 1469744..1470010 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABK447_RS07650 (ABK447_07640) | comGD | 1470000..1470437 (+) | 438 | WP_043020787.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| ABK447_RS07655 (ABK447_07645) | comGE | 1470421..1470735 (+) | 315 | WP_012117982.1 | competence type IV pilus minor pilin ComGE | - |
| ABK447_RS07660 (ABK447_07650) | comGF | 1470644..1471144 (+) | 501 | WP_257899725.1 | competence type IV pilus minor pilin ComGF | - |
| ABK447_RS07665 (ABK447_07655) | comGG | 1471145..1471522 (+) | 378 | WP_012117980.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| ABK447_RS07670 (ABK447_07660) | - | 1471579..1471758 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| ABK447_RS07675 (ABK447_07665) | - | 1471798..1472127 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| ABK447_RS07680 (ABK447_07670) | tapA | 1472386..1473057 (+) | 672 | WP_124934997.1 | amyloid fiber anchoring/assembly protein TapA | - |
| ABK447_RS07685 (ABK447_07675) | sipW | 1473029..1473613 (+) | 585 | WP_015240205.1 | signal peptidase I SipW | - |
| ABK447_RS07690 (ABK447_07680) | tasA | 1473678..1474463 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| ABK447_RS07695 (ABK447_07685) | sinR | 1474511..1474846 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=1009182 ABK447_RS07645 WP_042635730.1 1469744..1470010(+) (comGC) [Bacillus sp. hwrm1]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=1009182 ABK447_RS07645 WP_042635730.1 1469744..1470010(+) (comGC) [Bacillus sp. hwrm1]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |