Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABK447_RS02765 Genome accession   NZ_CP157943
Coordinates   534783..535472 (+) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus sp. hwrm1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 529783..540472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS02740 (ABK447_02735) degS 530066..531229 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABK447_RS02745 (ABK447_02740) degU 531306..531995 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABK447_RS02750 (ABK447_02745) - 532093..532941 (+) 849 WP_094031329.1 DegV family protein -
  ABK447_RS02755 (ABK447_02750) comFA 533050..534435 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  ABK447_RS02760 (ABK447_02755) - 534493..534777 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  ABK447_RS02765 (ABK447_02760) comFC 534783..535472 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  ABK447_RS02770 (ABK447_02765) - 535546..535965 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABK447_RS02775 (ABK447_02770) flgM 536035..536301 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABK447_RS02780 (ABK447_02775) - 536316..536798 (+) 483 WP_003151394.1 flagellar protein FlgN -
  ABK447_RS02785 (ABK447_02780) flgK 536814..538331 (+) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  ABK447_RS02790 (ABK447_02785) flgL 538343..539260 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ABK447_RS02795 (ABK447_02790) - 539352..539921 (+) 570 WP_007407476.1 DUF6470 family protein -
  ABK447_RS02800 (ABK447_02795) fliW 539951..540382 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=1009162 ABK447_RS02765 WP_197200179.1 534783..535472(+) (comFC) [Bacillus sp. hwrm1]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1009162 ABK447_RS02765 WP_197200179.1 534783..535472(+) (comFC) [Bacillus sp. hwrm1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment