Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABK447_RS02745 Genome accession   NZ_CP157943
Coordinates   531306..531995 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. hwrm1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 526306..536995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABK447_RS02725 (ABK447_02720) - 526781..527857 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  ABK447_RS02730 (ABK447_02725) - 527956..529191 (-) 1236 WP_025285355.1 LCP family protein -
  ABK447_RS02735 (ABK447_02730) - 529196..529843 (-) 648 WP_007407485.1 YigZ family protein -
  ABK447_RS02740 (ABK447_02735) degS 530066..531229 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ABK447_RS02745 (ABK447_02740) degU 531306..531995 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABK447_RS02750 (ABK447_02745) - 532093..532941 (+) 849 WP_094031329.1 DegV family protein -
  ABK447_RS02755 (ABK447_02750) comFA 533050..534435 (+) 1386 WP_099320008.1 DEAD/DEAH box helicase Machinery gene
  ABK447_RS02760 (ABK447_02755) - 534493..534777 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  ABK447_RS02765 (ABK447_02760) comFC 534783..535472 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  ABK447_RS02770 (ABK447_02765) - 535546..535965 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ABK447_RS02775 (ABK447_02770) flgM 536035..536301 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABK447_RS02780 (ABK447_02775) - 536316..536798 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1009160 ABK447_RS02745 WP_003219701.1 531306..531995(+) (degU) [Bacillus sp. hwrm1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1009160 ABK447_RS02745 WP_003219701.1 531306..531995(+) (degU) [Bacillus sp. hwrm1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment