Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABKA15_RS07820 Genome accession   NZ_CP157941
Coordinates   1597073..1597804 (-) Length   243 a.a.
NCBI ID   WP_003025975.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_010     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1592073..1602804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS07790 (ABKA15_07780) rimP 1592458..1592946 (-) 489 WP_049514335.1 ribosome maturation factor RimP -
  ABKA15_RS07795 (ABKA15_07785) - 1593194..1593883 (-) 690 WP_026248194.1 VIT family protein -
  ABKA15_RS07800 (ABKA15_07790) - 1594025..1594206 (-) 182 Protein_1528 dihydroxyacetone kinase transcriptional activator DhaS -
  ABKA15_RS07805 (ABKA15_07795) trmB 1594550..1595185 (-) 636 WP_049514336.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ABKA15_RS07810 (ABKA15_07800) - 1595182..1595979 (-) 798 WP_049514337.1 phosphotransferase family protein -
  ABKA15_RS07815 (ABKA15_07805) pptB 1596030..1597076 (-) 1047 WP_049514339.1 ABC transporter permease Regulator
  ABKA15_RS07820 (ABKA15_07810) pptA 1597073..1597804 (-) 732 WP_003025975.1 ABC transporter ATP-binding protein Regulator
  ABKA15_RS07825 (ABKA15_07815) - 1597873..1598283 (+) 411 WP_003025977.1 HIT family protein -
  ABKA15_RS07830 (ABKA15_07820) - 1598293..1598580 (+) 288 WP_049514340.1 hypothetical protein -
  ABKA15_RS07835 (ABKA15_07825) - 1598627..1599742 (-) 1116 WP_049514342.1 LCP family protein -
  ABKA15_RS07840 (ABKA15_07830) - 1599749..1600270 (-) 522 WP_186832779.1 GNAT family N-acetyltransferase -
  ABKA15_RS07845 (ABKA15_07835) tsaE 1600263..1600703 (-) 441 WP_049514344.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  ABKA15_RS07850 (ABKA15_07840) - 1600946..1602385 (-) 1440 WP_049514535.1 NCS2 family permease -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26832.36 Da        Isoelectric Point: 4.6585

>NTDB_id=1009138 ABKA15_RS07820 WP_003025975.1 1597073..1597804(-) (pptA) [Streptococcus sp. KHUD_010]
MLEIKGLTGGYVNIPVLKDISFTVGNGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDSPTAYREKIGFIP
ETPSLYEELTLREHIETVAMAYNVEQKVAFARVEKLLTMFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIELLEDEKAKGKSILMSTHVLDSAEKMCDSFVILHKGEIRAKGNLAELRAEFAMPEASLNDIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1009138 ABKA15_RS07820 WP_003025975.1 1597073..1597804(-) (pptA) [Streptococcus sp. KHUD_010]
ATGTTAGAAATAAAAGGGCTTACAGGGGGCTATGTGAATATCCCTGTTTTAAAAGACATCAGTTTCACAGTAGGAAATGG
GGAACTGGTGGGGTTGATTGGCTTGAATGGTGCGGGTAAATCCACTACAATCAATGAAATTATCGGACTTTTAACTCCTT
ATAAGGGTGAAATTTTAATTGACGGTGCCAAACTGCAAGATAGTCCTACGGCTTATCGTGAGAAAATTGGTTTTATTCCG
GAAACACCTAGTTTGTACGAAGAATTGACTTTAAGAGAACATATTGAAACGGTTGCTATGGCCTATAATGTGGAGCAAAA
GGTGGCTTTTGCACGCGTGGAGAAATTATTGACCATGTTTCGCTTGAAAGAAAAATTAGATTGGTTTCCGGTGCATTTTT
CTAAAGGAATGAAGCAAAAAGTCATGATTATTTGTGCCTTTGTAGTCGATCCAAGTCTTTTTATCGTTGATGAACCATTT
TTGGGACTTGATCCAGTTGCTATTGCTGACTTGATAGAGCTTTTGGAGGATGAAAAGGCAAAAGGCAAGTCAATTCTCAT
GAGTACGCATGTGCTGGATTCGGCAGAAAAGATGTGTGATTCATTCGTGATATTGCATAAGGGAGAAATCCGAGCTAAAG
GCAATTTAGCAGAATTACGAGCAGAATTTGCTATGCCAGAAGCTAGTCTCAATGACATTTATCTAGCTTTGACAGAAGAG
GCGAGCCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

72.803

98.354

0.716
  pptA Streptococcus salivarius strain HSISS4

72.385

98.354

0.712

Multiple sequence alignment