Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ABKA15_RS04385 Genome accession   NZ_CP157941
Coordinates   882984..883673 (+) Length   229 a.a.
NCBI ID   WP_049513304.1    Uniprot ID   A0A7L8W4W3
Organism   Streptococcus sp. KHUD_010     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 877984..888673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKA15_RS04365 (ABKA15_04360) - 878656..880211 (-) 1556 Protein_848 chloride channel protein -
  ABKA15_RS04370 (ABKA15_04365) - 880439..881167 (-) 729 WP_049513302.1 ABC transporter permease -
  ABKA15_RS04375 (ABKA15_04370) - 881164..881904 (-) 741 WP_003024586.1 ABC transporter permease -
  ABKA15_RS04380 (ABKA15_04375) - 881904..882812 (-) 909 WP_049513303.1 ATP-binding cassette domain-containing protein -
  ABKA15_RS04385 (ABKA15_04380) scnR 882984..883673 (+) 690 WP_049513304.1 response regulator transcription factor Regulator
  ABKA15_RS04390 (ABKA15_04385) scnK 883674..884984 (+) 1311 WP_021001669.1 HAMP domain-containing sensor histidine kinase Regulator
  ABKA15_RS04395 (ABKA15_04390) - 885281..886654 (-) 1374 WP_049513305.1 FAD-dependent oxidoreductase -
  ABKA15_RS04400 (ABKA15_04395) - 886940..887869 (+) 930 WP_318630706.1 FAD:protein FMN transferase -
  ABKA15_RS04405 (ABKA15_04400) - 887889..888497 (+) 609 WP_049513309.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26297.59 Da        Isoelectric Point: 6.5039

>NTDB_id=1009116 ABKA15_RS04385 WP_049513304.1 882984..883673(+) (scnR) [Streptococcus sp. KHUD_010]
MNYKEKKILILDDNPEILEMVQESLNIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPTCQVHFSQALITKGKLEIQLTAKEY
SILKVLYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1009116 ABKA15_RS04385 WP_049513304.1 882984..883673(+) (scnR) [Streptococcus sp. KHUD_010]
ATGAATTATAAAGAAAAGAAGATCTTAATTTTAGACGATAATCCAGAAATTTTAGAAATGGTGCAAGAATCATTGAACAT
TGCTGGTTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGTTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGTTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTACTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGGTCTTATATGATAATAAGAATCGCATTGTTACTTTTGACCAACTCTTAGAAAAAGTCTGGGGCTTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATCGAAGCCAATCCATCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L8W4W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

88.21

100

0.882
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376

Multiple sequence alignment