Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABNP43_RS14880 Genome accession   NZ_CP157878
Coordinates   2849695..2850336 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCu11     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844695..2855336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP43_RS14845 (ABNP43_14830) - 2845823..2846254 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  ABNP43_RS14850 (ABNP43_14835) - 2846254..2846595 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  ABNP43_RS14855 (ABNP43_14840) - 2846588..2848066 (+) 1479 WP_019744043.1 Na+/H+ antiporter subunit D -
  ABNP43_RS14860 (ABNP43_14845) - 2848073..2848552 (+) 480 WP_341042046.1 Na+/H+ antiporter subunit E -
  ABNP43_RS14865 (ABNP43_14850) - 2848552..2848833 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  ABNP43_RS14870 (ABNP43_14855) mnhG 2848817..2849191 (+) 375 WP_035701201.1 monovalent cation/H(+) antiporter subunit G -
  ABNP43_RS14875 (ABNP43_14860) - 2849282..2849671 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  ABNP43_RS14880 (ABNP43_14865) comA 2849695..2850336 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  ABNP43_RS14885 (ABNP43_14870) comP 2850417..2852723 (-) 2307 WP_349925027.1 ATP-binding protein Regulator
  ABNP43_RS14890 (ABNP43_14875) comX 2852737..2852907 (-) 171 WP_017358941.1 competence pheromone ComX -
  ABNP43_RS14895 (ABNP43_14880) - 2852885..2853808 (-) 924 WP_035389264.1 polyprenyl synthetase family protein -
  ABNP43_RS14900 (ABNP43_14885) degQ 2853960..2854100 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  ABNP43_RS14905 (ABNP43_14890) - 2854606..2854959 (+) 354 WP_019744042.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=1008836 ABNP43_RS14880 WP_007500477.1 2849695..2850336(-) (comA) [Bacillus altitudinis strain SCu11]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1008836 ABNP43_RS14880 WP_007500477.1 2849695..2850336(-) (comA) [Bacillus altitudinis strain SCu11]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCAATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment