Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ABNP31_RS07255 Genome accession   NZ_CP157874
Coordinates   1593927..1596143 (+) Length   738 a.a.
NCBI ID   WP_085664999.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain C-B8A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1588927..1601143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP31_RS07235 (ABNP31_07235) - 1590792..1591415 (+) 624 WP_085664916.1 glutathione S-transferase -
  ABNP31_RS07240 (ABNP31_07240) - 1591560..1592492 (+) 933 WP_046617069.1 ABC transporter ATP-binding protein -
  ABNP31_RS07245 (ABNP31_07245) - 1592489..1593268 (+) 780 WP_003260104.1 ABC transporter permease -
  ABNP31_RS07250 (ABNP31_07250) - 1593278..1593784 (-) 507 Protein_1404 DUF2062 domain-containing protein -
  ABNP31_RS07255 (ABNP31_07255) comA 1593927..1596143 (+) 2217 WP_085664999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNP31_RS07260 (ABNP31_07260) - 1596287..1597318 (+) 1032 WP_085693505.1 IS110 family transposase -
  ABNP31_RS07265 (ABNP31_07265) exbB 1597711..1598346 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABNP31_RS07270 (ABNP31_07270) - 1598343..1598777 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  ABNP31_RS07275 (ABNP31_07275) lpxK 1598777..1599778 (+) 1002 WP_085664918.1 tetraacyldisaccharide 4'-kinase -
  ABNP31_RS07280 (ABNP31_07280) - 1599823..1600008 (+) 186 WP_011532874.1 Trm112 family protein -
  ABNP31_RS07285 (ABNP31_07285) kdsB 1600005..1600769 (+) 765 WP_350013144.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79603.32 Da        Isoelectric Point: 9.6858

>NTDB_id=1008727 ABNP31_RS07255 WP_085664999.1 1593927..1596143(+) (comA) [Pseudomonas asiatica strain C-B8A]
MRTGMFALALGLLCLGFLPALPSVGWLVLLAVVGGLGLFTRLWPLGCFLLGLCWACWSAQQALDDRLAPGLDGRTLWLEG
QVVGLPTRTAQGVRFELDAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVVGGWRDTLRQRLLAVDANGRQAALVALVLGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLDATLPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLGYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLLLPLGGVGEALLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETVPFGQVEVWQLDVGQGLAVLLRTRHHDLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLVLVSHAHADHAGGAG
AIMRGLPVERVIGGEVLDDMQLQPCVSGDQWTWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATESPRIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAVQGALRLVLGRQG
EVESVRRQRRFWRDAGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=1008727 ABNP31_RS07255 WP_085664999.1 1593927..1596143(+) (comA) [Pseudomonas asiatica strain C-B8A]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTGTAGTCGGTGGCCTCGGCCTGTTCACCCGGCTGTGGCCGCTGGGCTGTTTTCTGTTGGGCCTGTGTT
GGGCTTGCTGGTCTGCGCAGCAGGCCCTGGATGACCGCCTGGCCCCAGGGCTGGATGGCCGCACCTTGTGGCTTGAGGGC
CAGGTGGTCGGCCTGCCGACCCGGACTGCGCAGGGTGTGCGTTTCGAGCTGGACGCGGCCCGCTCGCGGCGGGCAGAGCT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGCCCGCCGCTGCGCGCCGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAACCCGCATGGGCCGGACCGTGAGGCGCAATTGCTGGCGCGGCGGGTCGGTGCGACCGGT
ACGGTCAAGGCCGGGCAGTTGCTGGCGCCGGTTGTCGGCGGCTGGCGCGACACGCTGCGCCAGCGCCTGCTGGCAGTGGA
CGCCAATGGCCGGCAGGCAGCGTTGGTGGCGCTGGTGCTTGGCGACGGGGCAGGCCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATCTCTGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGTTGCCCTGGCTGCCCTGGGCGTGTGGCCTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGCTTTCGCCACCTCGATGCGACCTTGCCGTTGCTGCTGGCGCTGGTTGCCGTGCTGCTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGGCTATTGCTTCAGTGCCCGCCTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGTGATTGCCATCGGTTTGTTGCCGGTGCTGCTGGCTACGGGCT
TGCCCGTGAGCCTGAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCTTGGGTCAGCCTGGCGGTACTGCCGTTGGCGTTG
CTGGGGACCTTGCTGCTGCCGCTGGGCGGGGTGGGGGAGGCGCTGCTCTGGCTGGCGGGTGGTCTGCTCGATGTGCTTTT
CCGGCTGCTGGAGTTGGTGGCGCAACAGCAGTCGGCGTGGCTGCCAGCAGTTCTGCCATTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGCTGCTGGTTTTGATGCCCCGTGGCGTCCCACTGCGCGGGTTGGGTGGCGTGATGCTGCTGGCGCTGTGG
GTACCCCGGGAGACGGTGCCGTTCGGCCAGGTCGAGGTCTGGCAGCTGGACGTCGGCCAGGGGCTGGCGGTGCTGTTGCG
CACCCGGCATCACGACCTGCTGTACGACGCCGGGCCGGCCAGGGGGGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGCAGCCTGGACCTGGTGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCATGCGTGGCCTGCCGGTCGAACGGGTGATCGGCGGCGAAGTGCTGGATGACATGCAACTGCAGCCTTGTGTCAG
TGGCGACCAGTGGACGTGGGATGGCGTGCGCTTTTCGCTGTGGCGCTGGGCTGATGGGCAGAGCAGCAATGACCGTTCCT
GTGTGTTGCTGGTCGAGGCGCAGGGTGAGCGGTTGTTGCTGGCGGGAGATATGGAAGCCGGTGCCGAACGGGCCTGGCTT
GCGGCTACAGAATCGCCGCGGATCGACTGGCTGCAGTCGCCGCACCATGGCAGCCGCAGTTCGTCCAGCGAGGCCTTCAT
ACGCGCCACGGCACCGCGCGGGGTACTGATTTCACGGGGGCGCAACAACAGCTTCGGGCACCCGCATGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACAGCGGTGCAGGGGGCGCTGCGGTTGGTGTTGGGGAGGCAGGGG
GAGGTCGAGAGTGTGCGCCGACAGAGGCGTTTCTGGAGGGATGCGGGCGGTGGCTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.388

97.425

0.579
  comA Ralstonia pseudosolanacearum GMI1000

35.451

100

0.378

Multiple sequence alignment