Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABNP31_RS07265 Genome accession   NZ_CP157874
Coordinates   1597711..1598346 (+) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas asiatica strain C-B8A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592711..1603346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP31_RS07250 (ABNP31_07250) - 1593278..1593784 (-) 507 Protein_1404 DUF2062 domain-containing protein -
  ABNP31_RS07255 (ABNP31_07255) comA 1593927..1596143 (+) 2217 WP_085664999.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNP31_RS07260 (ABNP31_07260) - 1596287..1597318 (+) 1032 WP_085693505.1 IS110 family transposase -
  ABNP31_RS07265 (ABNP31_07265) exbB 1597711..1598346 (+) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABNP31_RS07270 (ABNP31_07270) - 1598343..1598777 (+) 435 WP_025338207.1 biopolymer transporter ExbD -
  ABNP31_RS07275 (ABNP31_07275) lpxK 1598777..1599778 (+) 1002 WP_085664918.1 tetraacyldisaccharide 4'-kinase -
  ABNP31_RS07280 (ABNP31_07280) - 1599823..1600008 (+) 186 WP_011532874.1 Trm112 family protein -
  ABNP31_RS07285 (ABNP31_07285) kdsB 1600005..1600769 (+) 765 WP_350013144.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABNP31_RS07290 (ABNP31_07290) - 1600769..1601233 (+) 465 WP_063911712.1 low molecular weight protein-tyrosine-phosphatase -
  ABNP31_RS07295 (ABNP31_07295) murB 1601230..1602249 (+) 1020 WP_085664920.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=1008728 ABNP31_RS07265 WP_016391244.1 1597711..1598346(+) (exbB) [Pseudomonas asiatica strain C-B8A]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1008728 ABNP31_RS07265 WP_016391244.1 1597711..1598346(+) (exbB) [Pseudomonas asiatica strain C-B8A]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAGATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAGGAATGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCTGCGCCGCATCGACGAGCTGGTAGTCGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment