Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABNP33_RS17260 Genome accession   NZ_CP157872
Coordinates   3646968..3648380 (+) Length   470 a.a.
NCBI ID   WP_005065713.1    Uniprot ID   A0A009RVI8
Organism   Acinetobacter pittii strain bac73     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3641968..3653380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS17240 (ABNP33_17235) thrC 3642224..3643363 (+) 1140 WP_002048893.1 threonine synthase -
  ABNP33_RS17245 (ABNP33_17240) pbpG 3643470..3644516 (-) 1047 WP_262440646.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABNP33_RS17250 (ABNP33_17245) gacA 3644729..3645364 (+) 636 WP_002121174.1 response regulator -
  ABNP33_RS17255 (ABNP33_17250) pilS 3645375..3646943 (+) 1569 WP_262440647.1 PAS domain-containing sensor histidine kinase Regulator
  ABNP33_RS17260 (ABNP33_17255) pilR 3646968..3648380 (+) 1413 WP_005065713.1 sigma-54 dependent transcriptional regulator Regulator
  ABNP33_RS17265 (ABNP33_17260) ctpA 3648384..3649568 (-) 1185 WP_262440648.1 S41 family peptidase -
  ABNP33_RS17270 (ABNP33_17265) gpmI 3649584..3651131 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABNP33_RS17275 (ABNP33_17270) lptG 3651258..3652328 (-) 1071 WP_002121203.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52610.64 Da        Isoelectric Point: 6.3452

>NTDB_id=1008714 ABNP33_RS17260 WP_005065713.1 3646968..3648380(+) (pilR) [Acinetobacter pittii strain bac73]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVQHVSQTYPHTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRTAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVQQGKFRQDLFFRIHVMDIMLPPLRDRGGDILL
LANHFIQKVCTEWGISSKQLTASAETYLLQQDFPGNVRELRNMIERAITLSDDESIDLTHLAPPLRGSSVSPQIVTKQLN
QTPAVQTHPKFPMEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEMGEEV

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=1008714 ABNP33_RS17260 WP_005065713.1 3646968..3648380(+) (pilR) [Acinetobacter pittii strain bac73]
ATGGCAGAACAGCAACCACTCGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTGTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAGACACATCTTGCTTATCGGGTTGAACAGGCCAAACAGCTCTTTACTCAGTTTCATTACGATGCGTGCT
TGACCGATTTAAATCTACCTGACGGTAGTGGCTTAGAATTGGTCCAACATGTTTCTCAAACTTACCCCCACACTCCCATT
GCAGTCTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTCAGCAAACC
AATTAACCAAATTCATTTAGATCAGCTGTTAAAAAAGGCGCTCAACCAGCCAAAACCAGAGCATGAATTTGGTGAAACAA
CTCTAGAGAATGACTTATTAATTGGGCGTTCGCCACCTATACAAAACTTACGGACAGCTATTAAAAAAATAGCCCGCTCC
CAAGCTCCTGTATTTGTTACAGGCGAGTCTGGTACGGGTAAAGAAGTTGTTGCTAATCTGATTCACCGATTAAGCAACCG
CAGTGAAGGACCATTTATTGCAATTAACTGTGGAGCAATCCCAACTGAGCTCATGGAAAGTGAACTTTTTGGGCATAAAA
AAGGGAGCTTTACTGGTGCGACTCAAGACAAACAAGGTCTGATTTTATCGGCACATGGCGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTGCCTTTAAGTATGCAAGTTAAATTGCTTCGCGCAGTACAAGAGAAAAAGATTCGCCCAGTAGGTTCAGA
TCAGGAAATTGATGTCGATTTTCGAGTAATCAGTGCCAGTCACCAAGACTTAGATTTATTAGTTCAACAAGGTAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATTATGCTGCCGCCACTGCGTGACCGTGGTGGAGATATTTTGCTA
TTGGCCAATCATTTTATTCAAAAGGTTTGTACGGAATGGGGAATTTCAAGCAAGCAATTAACGGCGAGCGCTGAGACTTA
CTTATTGCAGCAAGACTTCCCGGGTAACGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACTTTAAGTGATGATG
AGTCCATTGATTTAACACACTTAGCGCCTCCTCTTAGAGGCAGTAGCGTGAGCCCGCAAATCGTAACGAAACAACTAAAT
CAAACACCGGCTGTTCAGACTCACCCAAAATTTCCAATGGAGGGTTTAGAACGCTACTTAGAAAATATCGAAAAAGATAT
TTTACTGAATGCTCTGAACATGACGCATTGGAATCGAACTTTAGCGGCTAAAAAGTTAGGAATGACTTTCCGTTCTTTGC
GCTATCGACTCAAAAAATTTGGCTTAGATACTGAAATGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RVI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.047

100

0.866
  pilR Pseudomonas aeruginosa PAK

51.096

97.021

0.496

Multiple sequence alignment