Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABNP33_RS17255 Genome accession   NZ_CP157872
Coordinates   3645375..3646943 (+) Length   522 a.a.
NCBI ID   WP_262440647.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3640375..3651943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS17235 (ABNP33_17230) hom 3640868..3642169 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  ABNP33_RS17240 (ABNP33_17235) thrC 3642224..3643363 (+) 1140 WP_002048893.1 threonine synthase -
  ABNP33_RS17245 (ABNP33_17240) pbpG 3643470..3644516 (-) 1047 WP_262440646.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABNP33_RS17250 (ABNP33_17245) gacA 3644729..3645364 (+) 636 WP_002121174.1 response regulator -
  ABNP33_RS17255 (ABNP33_17250) pilS 3645375..3646943 (+) 1569 WP_262440647.1 PAS domain-containing sensor histidine kinase Regulator
  ABNP33_RS17260 (ABNP33_17255) pilR 3646968..3648380 (+) 1413 WP_005065713.1 sigma-54 dependent transcriptional regulator Regulator
  ABNP33_RS17265 (ABNP33_17260) ctpA 3648384..3649568 (-) 1185 WP_262440648.1 S41 family peptidase -
  ABNP33_RS17270 (ABNP33_17265) gpmI 3649584..3651131 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59052.59 Da        Isoelectric Point: 6.2829

>NTDB_id=1008713 ABNP33_RS17255 WP_262440647.1 3645375..3646943(+) (pilS) [Acinetobacter pittii strain bac73]
MQFPINSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDTSLQQPALYSYTLLGYSILSLIQLLCFKFIATQATRQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1008713 ABNP33_RS17255 WP_262440647.1 3645375..3646943(+) (pilS) [Acinetobacter pittii strain bac73]
ATGCAATTTCCCATAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCCCAAATCGACACTAGTCTACAACAACCCGCTTTATATTCTT
ACACACTACTCGGCTATTCAATCTTAAGCCTTATTCAACTTTTATGCTTTAAATTTATTGCTACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATGTTATTTGCCTGAGTTTACTTACATTTTCAGTAGGCGAACCCAATCTTCAACTCAG
CTTGCTCTATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCTTTA
TTGGCCTTCTTATTTTTTGTAGTACATGGCATCGGGCAAATTGCGGTTCAGCGCTTTAAGTTACTTGAGGCGCTGACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGTTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAACCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACTTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCGCAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATCCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTGCTCAAAGATAGTGATTCAGAACAGCA
AAACACTTTGCGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTATCCGATCCAGATTGAACTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATGCAATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGACACAATGCACCCGATTCGCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAGCCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.253

100

0.943

Multiple sequence alignment