Detailed information NTG1008710

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABNP33_RS16795
• Genome accession: NZ_CP157872
• Coordinates: 3554349..3555209 (+)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain bac73
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3549349..3560209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP33_RS16775 (ABNP33_16770)	secG	3549956..3550285 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
ABNP33_RS16780 (ABNP33_16775)	tpiA	3550298..3551092 (-)	795	WP_046812055.1	triose-phosphate isomerase	-
ABNP33_RS16785 (ABNP33_16780)	pilB	3551384..3553096 (+)	1713	WP_349913666.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABNP33_RS16790 (ABNP33_16785)	pilC	3553123..3554349 (+)	1227	WP_005079343.1	type II secretion system F family protein	Machinery gene
ABNP33_RS16795 (ABNP33_16790)	pilD	3554349..3555209 (+)	861	WP_002114758.1	A24 family peptidase	Machinery gene
ABNP33_RS16800 (ABNP33_16795)	coaE	3555211..3555807 (+)	597	WP_002115011.1	dephospho-CoA kinase	-
ABNP33_RS16805 (ABNP33_16800)	-	3555804..3556718 (-)	915	WP_005079347.1	DMT family transporter	-
ABNP33_RS16810 (ABNP33_16805)	rlmB	3556754..3557503 (-)	750	WP_032052994.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABNP33_RS16815 (ABNP33_16810)	-	3557606..3557932 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
ABNP33_RS16820 (ABNP33_16815)	-	3558009..3559319 (-)	1311	WP_032052995.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=1008710 ABNP33_RS16795 WP_002114758.1 3554349..3555209(+) (pilD) [Acinetobacter pittii strain bac73]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1008710 ABNP33_RS16795 WP_002114758.1 3554349..3555209(+) (pilD) [Acinetobacter pittii strain bac73]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACACCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437