Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABNP33_RS15535 Genome accession   NZ_CP157872
Coordinates   3281162..3281566 (-) Length   134 a.a.
NCBI ID   WP_032007083.1    Uniprot ID   A0AB35K3B2
Organism   Acinetobacter pittii strain bac73     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3276162..3286566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS15505 (ABNP33_15500) - 3276246..3276515 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABNP33_RS15510 (ABNP33_15505) rapZ 3276512..3277363 (-) 852 WP_005066272.1 RNase adapter RapZ -
  ABNP33_RS15515 (ABNP33_15510) panC 3277387..3278235 (-) 849 WP_032007086.1 pantoate--beta-alanine ligase -
  ABNP33_RS15520 (ABNP33_15515) panB 3278239..3279048 (-) 810 WP_002117298.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABNP33_RS15525 (ABNP33_15520) folK 3279094..3279576 (-) 483 WP_064785482.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABNP33_RS15530 (ABNP33_15525) pcnB 3279573..3281036 (-) 1464 WP_206261194.1 polynucleotide adenylyltransferase PcnB -
  ABNP33_RS15535 (ABNP33_15530) comEA 3281162..3281566 (-) 405 WP_032007083.1 ComEA family DNA-binding protein Machinery gene
  ABNP33_RS15540 (ABNP33_15535) mazG 3281535..3282341 (-) 807 WP_017482387.1 nucleoside triphosphate pyrophosphohydrolase -
  ABNP33_RS15545 (ABNP33_15540) - 3282454..3283227 (+) 774 WP_032007082.1 SDR family oxidoreductase -
  ABNP33_RS15550 (ABNP33_15545) relA 3283274..3285580 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15467.71 Da        Isoelectric Point: 10.4871

>NTDB_id=1008702 ABNP33_RS15535 WP_032007083.1 3281162..3281566(-) (comEA) [Acinetobacter pittii strain bac73]
MQFSMNLWKNKHNIFIILFWSVISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHASHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1008702 ABNP33_RS15535 WP_032007083.1 3281162..3281566(-) (comEA) [Acinetobacter pittii strain bac73]
ATGCAATTCAGCATGAATCTTTGGAAAAATAAGCACAATATTTTCATTATTTTATTTTGGAGCGTGATTTCATCAACTTT
TGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACGCCTCTCATTCTAATAGTCCAAAAAGCTCAGTTATGACTGATTCATCAGGACAAATTCATTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGCGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

70.803

100

0.724
  comEA Acinetobacter baumannii D1279779

70.073

100

0.716
  comEA Acinetobacter baylyi ADP1

41.935

92.537

0.388

Multiple sequence alignment