Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABNP33_RS01635 Genome accession   NZ_CP157872
Coordinates   342403..343212 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 337403..348212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01600 (ABNP33_01600) - 337961..338116 (-) 156 Protein_306 hypothetical protein -
  ABNP33_RS01605 (ABNP33_01605) rpoZ 338155..338433 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ABNP33_RS01610 (ABNP33_01610) gmk 338506..339135 (-) 630 WP_002116973.1 guanylate kinase -
  ABNP33_RS01615 (ABNP33_01615) ispH 339258..340208 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABNP33_RS01620 (ABNP33_01620) fimU 340378..340851 (+) 474 WP_262440243.1 GspH/FimT family pseudopilin Machinery gene
  ABNP33_RS01625 (ABNP33_01625) pilV 340845..341405 (+) 561 WP_262440244.1 type IV pilus modification protein PilV Machinery gene
  ABNP33_RS01630 (ABNP33_01630) pilW 341405..342406 (+) 1002 WP_069030422.1 PilW family protein Machinery gene
  ABNP33_RS01635 (ABNP33_01635) pilX 342403..343212 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNP33_RS01640 (ABNP33_01640) pilY1 343224..347078 (+) 3855 WP_262440245.1 PilC/PilY family type IV pilus protein Machinery gene
  ABNP33_RS01645 (ABNP33_01645) pilY2 347089..347571 (+) 483 WP_069030420.1 type IV pilin protein Machinery gene
  ABNP33_RS01650 (ABNP33_01650) pilE 347568..347993 (+) 426 WP_349913984.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=1008682 ABNP33_RS01635 WP_002117088.1 342403..343212(+) (pilX) [Acinetobacter pittii strain bac73]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1008682 ABNP33_RS01635 WP_002117088.1 342403..343212(+) (pilX) [Acinetobacter pittii strain bac73]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment