Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   ABNP33_RS01630 Genome accession   NZ_CP157872
Coordinates   341405..342406 (+) Length   333 a.a.
NCBI ID   WP_069030422.1    Uniprot ID   -
Organism   Acinetobacter pittii strain bac73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336405..347406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP33_RS01600 (ABNP33_01600) - 337961..338116 (-) 156 Protein_306 hypothetical protein -
  ABNP33_RS01605 (ABNP33_01605) rpoZ 338155..338433 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ABNP33_RS01610 (ABNP33_01610) gmk 338506..339135 (-) 630 WP_002116973.1 guanylate kinase -
  ABNP33_RS01615 (ABNP33_01615) ispH 339258..340208 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABNP33_RS01620 (ABNP33_01620) fimU 340378..340851 (+) 474 WP_262440243.1 GspH/FimT family pseudopilin Machinery gene
  ABNP33_RS01625 (ABNP33_01625) pilV 340845..341405 (+) 561 WP_262440244.1 type IV pilus modification protein PilV Machinery gene
  ABNP33_RS01630 (ABNP33_01630) pilW 341405..342406 (+) 1002 WP_069030422.1 PilW family protein Machinery gene
  ABNP33_RS01635 (ABNP33_01635) pilX 342403..343212 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNP33_RS01640 (ABNP33_01640) pilY1 343224..347078 (+) 3855 WP_262440245.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35745.34 Da        Isoelectric Point: 6.3332

>NTDB_id=1008681 ABNP33_RS01630 WP_069030422.1 341405..342406(+) (pilW) [Acinetobacter pittii strain bac73]
MAHSFVSWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1008681 ABNP33_RS01630 WP_069030422.1 341405..342406(+) (pilW) [Acinetobacter pittii strain bac73]
ATGGCTCACTCATTTGTATCATGGAAGCAGCGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGGCTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGAGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGACCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAATGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.586

100

0.856

Multiple sequence alignment