Detailed information NTG1008663

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ABNP45_RS27085
• Genome accession: NZ_CP157871
• Coordinates: 5955666..5957000 (+)
• Length: 444 a.a.
• NCBI ID: WP_125063599.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain H407
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5950666..5962000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP45_RS27065 (ABNP45_27030)	pgeF	5952022..5952747 (-)	726	WP_350023244.1	peptidoglycan editing factor PgeF	-
ABNP45_RS27070 (ABNP45_27035)	rluD	5952744..5953706 (-)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
ABNP45_RS27075 (ABNP45_27040)	-	5953857..5954882 (+)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
ABNP45_RS27080 (ABNP45_27045)	-	5955007..5955240 (+)	234	WP_125063600.1	PP0621 family protein	-
ABNP45_RS27085 (ABNP45_27050)	pilR	5955666..5957000 (+)	1335	WP_125063599.1	sigma-54 dependent transcriptional regulator	Regulator
ABNP45_RS27090 (ABNP45_27055)	thiO	5956997..5958097 (-)	1101	WP_350023245.1	glycine oxidase ThiO	-
ABNP45_RS27095 (ABNP45_27060)	-	5958151..5958552 (-)	402	WP_015637084.1	type IV pilin protein	-
ABNP45_RS27100 (ABNP45_27065)	-	5958568..5961630 (-)	3063	WP_236203388.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49289.52 Da
• Isoelectric Point: 8.6800

>NTDB_id=1008663 ABNP45_RS27085 WP_125063599.1 5955666..5957000(+) (pilR) [Pseudomonas protegens strain H407]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKQATDCATEDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPVNCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=1008663 ABNP45_RS27085 WP_125063599.1 5955666..5957000(+) (pilR) [Pseudomonas protegens strain H407]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGTGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCAGGCCACGGACTGCGCAACGGAGGACCCAGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAACGGGTCGCCCGTCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGGTCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGCTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTTTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.431	99.775	0.633
pilR	Acinetobacter baumannii strain A118	45.534	100	0.471
luxO	Vibrio cholerae strain A1552	37.097	97.748	0.363