Detailed information NTG1008653

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ABNP45_RS09250
• Genome accession: NZ_CP157871
• Coordinates: 2013961..2016192 (+)
• Length: 743 a.a.
• NCBI ID: WP_350023769.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain H407
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2008961..2021192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABNP45_RS09225 (ABNP45_09210)	-	2010086..2010745 (+)	660	WP_232644428.1	transglutaminase family protein	-
ABNP45_RS09230 (ABNP45_09215)	-	2010788..2011411 (+)	624	WP_041116771.1	glutathione S-transferase	-
ABNP45_RS09235 (ABNP45_09220)	-	2011544..2012476 (+)	933	WP_011060096.1	ABC transporter ATP-binding protein	-
ABNP45_RS09240 (ABNP45_09225)	-	2012473..2013252 (+)	780	WP_011060097.1	ABC transporter permease	-
ABNP45_RS09245 (ABNP45_09230)	-	2013306..2013821 (-)	516	WP_015634695.1	DUF2062 domain-containing protein	-
ABNP45_RS09250 (ABNP45_09235)	comA	2013961..2016192 (+)	2232	WP_350023769.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ABNP45_RS09255 (ABNP45_09240)	exbB	2016295..2016930 (+)	636	WP_011060100.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ABNP45_RS09260 (ABNP45_09245)	-	2016927..2017355 (+)	429	WP_350023770.1	biopolymer transporter ExbD	-
ABNP45_RS09265 (ABNP45_09250)	lpxK	2017355..2018365 (+)	1011	WP_350023771.1	tetraacyldisaccharide 4'-kinase	-
ABNP45_RS09270 (ABNP45_09255)	-	2018390..2018575 (+)	186	WP_011060103.1	Trm112 family protein	-
ABNP45_RS09275 (ABNP45_09260)	kdsB	2018572..2019336 (+)	765	WP_011060104.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ABNP45_RS09280 (ABNP45_09265)	-	2019336..2019800 (+)	465	WP_041116777.1	low molecular weight protein-tyrosine-phosphatase	-
ABNP45_RS09285 (ABNP45_09270)	murB	2019797..2020816 (+)	1020	WP_011060106.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81386.85 Da
• Isoelectric Point: 11.2244

>NTDB_id=1008653 ABNP45_RS09250 WP_350023769.1 2013961..2016192(+) (comA) [Pseudomonas protegens strain H407]
MRSAMLALAAGLLALGFMPALPPGWLLLCMAILALMLLPFRTHPVAFFLFGFTWACVSAQSALDDRLAPRLEAQTRWLEG
RVSGLPEQAGGVVRFELEDAQARRERLPRRMRLAWREGPALKSGERWRLAVKLRQPMGLLNPQGFDYQAWLLARRIGATG
TVKAGQLLTPAPQAWRQGLRQRLLEVEAQGRGAGLAALVMGDGSGLTRQDWQLLQDTGTVHLMVISGQHISLLAGVIYFA
VAGLSRHGLWPERLPWLPWACALAWLGALGYGLLAGFDVPVQRACVMVALVLLWRMRFRHLRAGWPLLLALNAVLLAEPL
ASLQAGFWLSFAAVAILILIFAGRLGAWSWWQGWTRAQWLIAIGLLPPLLALGLPISLSGPLANLLAVPWISFLVLPPAL
LGSLLLPVPYVGEGLLWLAGGLLDGLFRLLGLIAGGWPAWMPPQIPLWLWGMNALGCLLLLLPRGVPMRVLGWPLLLLAV
WPPLARVPEGEVEVWQLDVGQGLSFILRTRDHALLYDAGARVAEFDLGERVVVPTLHRLGIRRLDLMLLSHADNDHAGGA
QAVRRAMPVGEVRGGQPDALPAGLQARPCDSGLSWVWNGVRFRQWQWAAATDGNQASCVLQVEAAGERLLLTGDIDARAE
RALLDSPLAVRTHWLQAPHHGSRTSSSMALLQRLAPDAVLISRGRGNAFGHPHPQVLARYRRLGMAIYDSAEQGALRLQL
GAFGAAHGLREQRRFWREPPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=1008653 ABNP45_RS09250 WP_350023769.1 2013961..2016192(+) (comA) [Pseudomonas protegens strain H407]
ATGCGTAGCGCAATGCTGGCGCTGGCTGCAGGGCTGCTGGCGCTGGGTTTCATGCCGGCCTTGCCCCCAGGCTGGCTGCT
GCTGTGTATGGCGATACTGGCCTTGATGCTGTTGCCGTTTCGTACACATCCGGTGGCATTTTTCCTGTTCGGTTTCACCT
GGGCCTGTGTGTCCGCGCAGTCGGCCCTGGATGATCGCCTGGCGCCGCGCCTGGAGGCACAGACCCGCTGGCTGGAGGGG
CGGGTGAGCGGCCTGCCGGAGCAGGCGGGCGGCGTGGTGCGTTTCGAGCTGGAAGATGCCCAGGCCCGCCGTGAGCGGCT
GCCCCGGCGCATGCGGCTGGCCTGGCGTGAGGGCCCGGCGCTCAAGAGTGGCGAGCGCTGGCGGCTGGCGGTCAAGCTTC
GGCAGCCGATGGGTTTGTTGAATCCCCAGGGCTTCGATTACCAGGCCTGGCTGCTGGCGCGCCGTATCGGCGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTGACACCGGCCCCGCAGGCCTGGCGGCAAGGCTTGCGCCAGCGCTTGCTAGAGGTCGA
GGCTCAGGGGCGCGGTGCGGGGTTGGCGGCGCTGGTGATGGGCGACGGTTCCGGCCTGACGCGGCAAGACTGGCAGCTGT
TGCAGGACACCGGCACCGTTCACCTGATGGTGATTTCCGGGCAGCACATCAGCCTGCTGGCTGGGGTGATCTATTTCGCG
GTGGCCGGGCTGTCCCGCCATGGTCTCTGGCCCGAGCGCTTGCCGTGGTTGCCCTGGGCCTGTGCCCTGGCCTGGCTCGG
CGCCCTGGGCTATGGCCTGCTGGCGGGGTTCGATGTGCCAGTACAGCGCGCCTGTGTGATGGTCGCCCTGGTACTGCTCT
GGCGCATGCGCTTTCGCCATCTGCGGGCCGGCTGGCCCCTGCTGCTGGCGTTGAATGCGGTGTTGCTGGCCGAGCCGCTG
GCCAGCTTGCAGGCGGGGTTCTGGCTGTCCTTTGCCGCAGTGGCAATCCTGATCTTGATCTTTGCCGGGCGCCTGGGGGC
GTGGAGCTGGTGGCAGGGCTGGACCCGGGCCCAATGGTTGATCGCCATTGGCCTGCTGCCGCCGTTGCTGGCTCTGGGGC
TGCCTATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGCTTTCTAGTGTTGCCGCCGGCTTTG
CTCGGCAGCCTGCTGCTGCCGGTGCCTTATGTGGGTGAGGGCCTGTTGTGGCTGGCCGGTGGATTGCTGGACGGGTTGTT
CCGCTTGCTCGGATTGATTGCCGGTGGGTGGCCGGCCTGGATGCCGCCGCAGATCCCTCTGTGGCTATGGGGCATGAATG
CTCTGGGCTGCCTGTTGCTGCTGTTGCCCAGGGGCGTGCCCATGCGGGTTCTGGGTTGGCCGCTGTTGCTCCTGGCGGTC
TGGCCACCCCTGGCGCGCGTGCCCGAAGGCGAGGTGGAGGTCTGGCAGCTGGATGTGGGGCAGGGCCTGTCATTCATCCT
GCGTACCCGTGATCACGCCCTGCTGTATGACGCTGGCGCGCGGGTCGCCGAGTTCGACCTGGGAGAGCGAGTGGTAGTGC
CGACCCTGCACAGGCTCGGCATCCGGCGGCTGGACCTGATGCTGCTCAGCCATGCCGACAACGACCATGCCGGTGGCGCC
CAGGCGGTGCGGCGCGCAATGCCCGTGGGCGAGGTCCGCGGTGGCCAGCCCGACGCCTTGCCCGCGGGCCTGCAGGCAAG
GCCTTGCGACAGTGGGCTGAGCTGGGTGTGGAATGGCGTGCGCTTTCGCCAGTGGCAATGGGCGGCGGCGACCGACGGCA
ATCAGGCCTCGTGCGTGCTCCAGGTCGAGGCTGCCGGCGAGCGCCTGCTGCTCACCGGGGACATCGACGCCCGTGCCGAG
CGAGCCTTGCTCGACAGCCCGCTGGCGGTGCGGACCCACTGGCTGCAGGCACCCCATCACGGCAGCCGTACCTCTTCATC
CATGGCCTTGCTGCAGCGGCTGGCCCCCGACGCGGTGCTGATTTCCCGTGGGCGGGGCAATGCCTTCGGCCACCCCCATC
CTCAAGTGCTGGCACGCTATCGGCGCCTGGGCATGGCAATTTATGACAGTGCCGAACAGGGCGCTCTGAGGCTGCAACTG
GGGGCCTTCGGGGCGGCGCATGGCCTTCGCGAGCAGCGGCGATTCTGGCGTGAGCCGCCCGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (20-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.296	96.501	0.62
comA	Ralstonia pseudosolanacearum GMI1000	32.773	100	0.367