Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABNP45_RS09255 Genome accession   NZ_CP157871
Coordinates   2016295..2016930 (+) Length   211 a.a.
NCBI ID   WP_011060100.1    Uniprot ID   A0A2C9EIY8
Organism   Pseudomonas protegens strain H407     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011295..2021930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP45_RS09235 (ABNP45_09220) - 2011544..2012476 (+) 933 WP_011060096.1 ABC transporter ATP-binding protein -
  ABNP45_RS09240 (ABNP45_09225) - 2012473..2013252 (+) 780 WP_011060097.1 ABC transporter permease -
  ABNP45_RS09245 (ABNP45_09230) - 2013306..2013821 (-) 516 WP_015634695.1 DUF2062 domain-containing protein -
  ABNP45_RS09250 (ABNP45_09235) comA 2013961..2016192 (+) 2232 WP_350023769.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABNP45_RS09255 (ABNP45_09240) exbB 2016295..2016930 (+) 636 WP_011060100.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABNP45_RS09260 (ABNP45_09245) - 2016927..2017355 (+) 429 WP_350023770.1 biopolymer transporter ExbD -
  ABNP45_RS09265 (ABNP45_09250) lpxK 2017355..2018365 (+) 1011 WP_350023771.1 tetraacyldisaccharide 4'-kinase -
  ABNP45_RS09270 (ABNP45_09255) - 2018390..2018575 (+) 186 WP_011060103.1 Trm112 family protein -
  ABNP45_RS09275 (ABNP45_09260) kdsB 2018572..2019336 (+) 765 WP_011060104.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABNP45_RS09280 (ABNP45_09265) - 2019336..2019800 (+) 465 WP_041116777.1 low molecular weight protein-tyrosine-phosphatase -
  ABNP45_RS09285 (ABNP45_09270) murB 2019797..2020816 (+) 1020 WP_011060106.1 UDP-N-acetylmuramate dehydrogenase -
  ABNP45_RS09290 (ABNP45_09275) - 2021059..2021529 (+) 471 WP_011060107.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23033.21 Da        Isoelectric Point: 7.4247

>NTDB_id=1008654 ABNP45_RS09255 WP_011060100.1 2016295..2016930(+) (exbB) [Pseudomonas protegens strain H407]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHILAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1008654 ABNP45_RS09255 WP_011060100.1 2016295..2016930(+) (exbB) [Pseudomonas protegens strain H407]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGCTGCCGTGGGCATCATTGC
CGAGCGTCTGTGGACCCTACGGGCCAGCCGTGTCACCCCGCCCCACCTGCTGGGGCAGGTCTGGCGCTGGATCAAGGACA
AGCAGCTGAACAAGGAAAAACTCAAGGAACTGCGCGCCGATTCGCCCCTGGGCGAGATTCTGGCGGCGGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCTGCCGCCCGGGTCATCCATGAGCTGGAACGCTACCT
CAACGCCCTCGGCACCATTGCCGCCATGGCACCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCGCACATCCTCGCAGGCGGTATTTCCAAAGCCCTGATCACCACCGCC
GCCGGCCTGATGGTGGGCATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGGGTCGATGAACTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EIY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment