Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   UXQ72_RS07620 Genome accession   NZ_CP157769
Coordinates   1568568..1569638 (-) Length   356 a.a.
NCBI ID   WP_000776409.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BSN118     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1563568..1574638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UXQ72_RS07580 (UXQ72_007580) gcvPA 1563745..1565091 (-) 1347 WP_336564944.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  UXQ72_RS07585 (UXQ72_007585) gcvT 1565111..1566202 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  UXQ72_RS07590 (UXQ72_007590) - 1566361..1566885 (-) 525 WP_001015120.1 shikimate kinase -
  UXQ72_RS07595 (UXQ72_007595) - 1566875..1567021 (-) 147 WP_001789879.1 hypothetical protein -
  UXQ72_RS07600 (UXQ72_007600) comGF 1567118..1567615 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  UXQ72_RS07605 (UXQ72_007605) comGE 1567533..1567832 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  UXQ72_RS07610 (UXQ72_007610) comGD 1567819..1568265 (-) 447 WP_216770765.1 competence type IV pilus minor pilin ComGD Machinery gene
  UXQ72_RS07615 (UXQ72_007615) comGC 1568243..1568554 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  UXQ72_RS07620 (UXQ72_007620) comGB 1568568..1569638 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  UXQ72_RS07625 (UXQ72_007625) comGA 1569610..1570584 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  UXQ72_RS07630 (UXQ72_007630) - 1570636..1571259 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  UXQ72_RS07635 (UXQ72_007635) - 1571256..1571585 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  UXQ72_RS07640 (UXQ72_007640) - 1571585..1572571 (-) 987 WP_000161307.1 ROK family glucokinase -
  UXQ72_RS07645 (UXQ72_007645) - 1572568..1572771 (-) 204 WP_000087561.1 YqgQ family protein -
  UXQ72_RS07650 (UXQ72_007650) - 1572752..1574215 (-) 1464 WP_001017870.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41536.00 Da        Isoelectric Point: 10.1113

>NTDB_id=1008178 UXQ72_RS07620 WP_000776409.1 1568568..1569638(-) (comGB) [Staphylococcus aureus strain BSN118]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGITILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNFTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVRQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1008178 UXQ72_RS07620 WP_000776409.1 1568568..1569638(-) (comGB) [Staphylococcus aureus strain BSN118]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCATCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATAATATTAAACTTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACTAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGCTATATTCGCAAATATTAGTGAGGCAAATAGAGGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

98.876

100

0.989
  comGB Staphylococcus aureus N315

98.876

100

0.989

Multiple sequence alignment