Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKJ27_RS05605 Genome accession   NZ_CP157578
Coordinates   1213252..1215219 (-) Length   655 a.a.
NCBI ID   WP_000837408.1    Uniprot ID   F9HCK4
Organism   Streptococcus sp. KHUD_011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1208252..1220219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS05570 (ABKJ27_05585) - 1208888..1209082 (-) 195 WP_001081602.1 DUF3272 domain-containing protein -
  ABKJ27_RS05575 (ABKJ27_05590) dnaX 1209110..1210765 (-) 1656 WP_314498628.1 DNA polymerase III subunit gamma/tau -
  ABKJ27_RS05580 (ABKJ27_05595) - 1210765..1211262 (-) 498 WP_386682521.1 GAF domain-containing protein -
  ABKJ27_RS05585 (ABKJ27_05600) rpsA 1211349..1212551 (-) 1203 WP_001001631.1 30S ribosomal protein S1 -
  ABKJ27_RS05600 (ABKJ27_05615) - 1212924..1213154 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  ABKJ27_RS05605 (ABKJ27_05620) amiA3 1213252..1215219 (-) 1968 WP_000837408.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS05610 (ABKJ27_05625) - 1215242..1216264 (-) 1023 WP_000218997.1 branched-chain amino acid aminotransferase -
  ABKJ27_RS05615 (ABKJ27_05630) parC 1216399..1218870 (-) 2472 WP_410011494.1 DNA topoisomerase IV subunit A -
  ABKJ27_RS05620 (ABKJ27_05635) - 1219105..1219926 (-) 822 WP_314498644.1 aminoglycoside 6-adenylyltransferase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72716.34 Da        Isoelectric Point: 5.1322

>NTDB_id=1007463 ABKJ27_RS05605 WP_000837408.1 1213252..1215219(-) (amiA3) [Streptococcus sp. KHUD_011]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1007463 ABKJ27_RS05605 WP_000837408.1 1213252..1215219(-) (amiA3) [Streptococcus sp. KHUD_011]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTAGTCCTGAGCACAACAGCTCTTTTAGTAGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTCTCATATGTCTATGCAGTAGATCCTGCATCTTTGGACTATAGTATAGCGACTC
GTACTTCTACAACAGATGTCATTGGGAACGTGGTTGATGGTTTGATGGAAAACGACCAATACGGAAATGTTATTCCTTCC
CTGGCTGAAGATTGGTCTGTCTCAAAAGATGGTTTGACTTATACCTATAAACTACGTAAAGGGGTTAAATGGTACACTTC
AGAAGGTGAAGAATACGCCGAAGTAACAGCCCATGACTTTGTAACAGGACTAAAACACGTGGCCGACGGTAAGTCAGACG
GTGTCTCTCTGATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAAACGAATGATTTCTCTACAGTTGGT
GTCAAAGCTTTGGACGATTACACAGTTGAATATACCCTAAACAAACCTGAAAGCTTCTGGAACTCTAAAGTCACAACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGGATTCTCT
ACAATGGTCCTTATATCTTGAAGACCTTGACTTCTAAATCGTTGATTGAATACGAGAAAAATCCAAATTACTGGGATAAA
GAAAAGGTAAAAATTGAGAAGATTAAATTGACTTACTACGATGGTTCTGATCAGGAATCCTTGATCCGTAGTTTCTCTTC
TGGTGCCTATACGACAGCTCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGCTATTACTTCACCTTTAACGTAAATCGTCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAGCAAAAAACTTCAACTAAAGAAGCTATGCTGAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCACAGCTAAATGGTGAAGACGGTGCGGACAAGATTATTCGTAACAGTCTCGTTCCTGACAACTTTG
TGCAAGCAGGTGGTAAGAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAATTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCAGCTTTTGAAAAAGCTAAGAAAGACCTAGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGATACCATCGCCGTTCAACAAAGTAACTCTT
TCAAACAGTCTATCGAATCAACACTTGGTGCTGAAAATGTTGTCATCGACGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGTTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCTATGAAGCACCTAGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCGAAACTTGGTTTGGACCAGTATAAGAAATTATTGGATGATGCCGATTCAGAAACTACGAATCTTGAA
GAACGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCTTCATCTGGTGG
TTCTCCAGTTGTAAGTAATGTCGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AAGGGATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HCK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA Streptococcus salivarius strain HSISS4

52.432

100

0.527
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527

Multiple sequence alignment