Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKJ27_RS03495 Genome accession   NZ_CP157578
Coordinates   762682..764664 (+) Length   660 a.a.
NCBI ID   WP_410012051.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 757682..769664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS03475 (ABKJ27_03490) - 758652..759530 (+) 879 WP_000301224.1 F0F1 ATP synthase subunit gamma -
  ABKJ27_RS03480 (ABKJ27_03495) atpD 759616..761022 (+) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  ABKJ27_RS03485 (ABKJ27_03500) - 761033..761452 (+) 420 WP_004256585.1 F0F1 ATP synthase subunit epsilon -
  ABKJ27_RS03490 (ABKJ27_03505) - 761497..762510 (-) 1014 WP_410012050.1 lactonase family protein -
  ABKJ27_RS03495 (ABKJ27_03510) amiA3 762682..764664 (+) 1983 WP_410012051.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS03500 (ABKJ27_03515) - 764782..765948 (+) 1167 WP_237446789.1 AI-2E family transporter -
  ABKJ27_RS03505 (ABKJ27_03520) - 765938..767167 (+) 1230 WP_410012052.1 tetratricopeptide repeat protein -
  ABKJ27_RS03510 (ABKJ27_03525) - 767306..767947 (+) 642 WP_153210613.1 amino acid ABC transporter permease -
  ABKJ27_RS03515 (ABKJ27_03530) - 767957..768586 (+) 630 WP_261046537.1 amino acid ABC transporter ATP-binding protein -
  ABKJ27_RS03520 (ABKJ27_03535) - 768596..769435 (+) 840 WP_410012053.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72777.01 Da        Isoelectric Point: 4.8745

>NTDB_id=1007453 ABKJ27_RS03495 WP_410012051.1 762682..764664(+) (amiA3) [Streptococcus sp. KHUD_011]
MKKRVFLASGVAVLSAAVLAACSSGNANKEANKPVTYAYVFSSDPSTLDYTVSGNVSTKQVTGNVIDGLLENDQYGNLVP
SVAEDWTVSKDGLTYTYKIRQGIKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTDFSSV
GVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVNEDFLASKGDDFGKPTDVTSILYNGPYLLKGLTSKSSIEMTKNQNYW
DKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYISTNIDRVNYNHTA
KTSDAEKTSTKKALLNKDFRQALAFAVDRKAGISQVFGDEVGPRKLRTSFTPPTFVQVGDQTFGQVTKTELDKLDNVWKD
VSLDDAQDSLHSVDKAKAKFEAAKKTLQAEGVQFPIHLDLPISSSNPDFIRQVQSYKQSIEEALGSDNVVVDIQQVSDDE
LGSMTTLATSNANTDWDINAVSGWTPDFADPSTYLDVFDPTSGPSLLSALGVAPGTDNPVIKTVGLDKYKELIDDANSEK
TDLQKRYSKYSKAQAWLSDSALVIPVYSDGAQMLVTKMVPGSGAGGWVGDKTSENSYKYLKIQDKIVTTKEMDEFRKKFA
DEKAKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=1007453 ABKJ27_RS03495 WP_410012051.1 762682..764664(+) (amiA3) [Streptococcus sp. KHUD_011]
ATGAAAAAACGTGTTTTCTTAGCATCAGGAGTTGCTGTACTCTCGGCAGCTGTCCTAGCAGCGTGTTCATCTGGTAATGC
TAATAAAGAAGCAAATAAACCAGTTACTTATGCCTATGTATTTTCATCAGATCCTTCTACTCTGGATTATACAGTTTCTG
GAAATGTCAGCACTAAACAGGTCACAGGTAACGTTATTGACGGTTTGCTTGAAAATGACCAATATGGGAATCTTGTTCCA
TCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACTTATAAAATCCGTCAGGGTATCAAATGGTATAC
CAATGAGGGGGAAGAGTATGGTGAAGTCAAGGCTCAAGACTTTGTGACTGGTCTGAAACACGCAGCAGATAAGAAATCAC
AGGCTCTTTATCTCGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGATTTTTCTAGTGTT
GGGGTAAAAGCAACTGACGATTATACTGTAGTCTATACTTTGAACCATCCAGAATCTTTCTGGAATTCAAAAACAACAAT
GGGAGTCCTTGCACCAGTTAATGAAGACTTTTTAGCTTCTAAAGGAGATGACTTTGGTAAACCAACGGATGTAACGAGCA
TTCTATATAATGGGCCTTATCTCCTCAAAGGTCTTACATCTAAGTCTTCTATCGAAATGACCAAAAATCAAAACTACTGG
GATAAACAAAATGTCTTTATTGATGATATCAAGTTATCCTTCTTTGATGGTCAAGATGCAGACTCTCTAGGACGCGGTTT
TGATGAGGGACACTATCCAGCTGCACCACTCTTTAAAAACTCTGCTAACTATGAACGTCTAAAAGAAAAATACAAGGATA
ATATTGTGTATGGTCAACAGCGTGGAGGAGTTTTTTATATCTCAACCAATATCGACCGTGTAAATTACAATCACACTGCT
AAAACAAGTGATGCAGAAAAAACTTCTACTAAGAAAGCCTTGTTAAACAAAGATTTCCGTCAAGCCTTGGCTTTTGCGGT
AGATCGTAAAGCAGGGATCTCTCAAGTATTTGGTGATGAAGTAGGACCTCGTAAGTTACGGACAAGTTTCACTCCTCCAA
CATTTGTTCAAGTAGGAGATCAAACATTTGGTCAAGTTACTAAGACAGAATTGGATAAATTGGATAATGTCTGGAAAGAT
GTCAGTCTTGATGATGCCCAAGATTCACTACATAGTGTAGATAAAGCCAAAGCTAAGTTTGAAGCTGCTAAGAAAACCCT
TCAAGCTGAAGGAGTACAGTTCCCAATTCATTTAGATTTGCCAATTTCTTCATCAAATCCAGATTTTATTCGTCAGGTTC
AGTCTTATAAACAATCCATTGAGGAAGCCTTAGGCTCTGACAATGTAGTTGTTGATATTCAACAAGTTTCTGATGACGAA
TTGGGAAGTATGACTACTCTAGCTACTTCCAATGCAAATACTGACTGGGATATTAATGCAGTCAGTGGTTGGACTCCAGA
CTTTGCAGATCCATCGACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTAAGTGCTCTTGGTGTGGCAC
CAGGAACAGACAATCCAGTTATTAAAACAGTTGGATTGGATAAATACAAAGAATTGATTGATGATGCAAATAGTGAGAAA
ACAGACCTTCAAAAACGTTATTCCAAATATTCTAAGGCTCAAGCTTGGTTGTCAGATAGTGCACTTGTTATTCCAGTATA
CTCTGATGGTGCTCAAATGCTAGTGACGAAAATGGTTCCTGGCAGTGGTGCCGGTGGCTGGGTAGGTGACAAGACTAGTG
AAAATAGCTACAAGTATCTGAAAATCCAAGATAAGATTGTCACTACTAAAGAAATGGATGAGTTCCGCAAGAAATTTGCT
GATGAAAAAGCCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.834

100

0.55
  amiA3 Streptococcus thermophilus LMG 18311

54.079

100

0.542
  amiA Streptococcus salivarius strain HSISS4

54.009

100

0.541

Multiple sequence alignment