Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ABKJ27_RS02695 Genome accession   NZ_CP157578
Coordinates   588199..590157 (+) Length   652 a.a.
NCBI ID   WP_410011983.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 583199..595157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS02670 (ABKJ27_02680) - 583361..583855 (+) 495 WP_410011981.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  ABKJ27_RS02675 (ABKJ27_02685) - 583839..584489 (+) 651 WP_247933411.1 DUF1803 domain-containing protein -
  ABKJ27_RS02680 (ABKJ27_02690) - 584591..584782 (+) 192 WP_000051184.1 CsbD family protein -
  ABKJ27_RS02685 (ABKJ27_02695) - 584831..586276 (-) 1446 WP_410011982.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ABKJ27_RS02690 (ABKJ27_02700) - 586382..588007 (+) 1626 WP_261102051.1 polysaccharide biosynthesis protein -
  ABKJ27_RS02695 (ABKJ27_02705) amiA 588199..590157 (+) 1959 WP_410011983.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS02700 (ABKJ27_02710) - 590476..590931 (+) 456 WP_410011984.1 hypothetical protein -
  ABKJ27_RS02705 (ABKJ27_02715) - 591096..592190 (+) 1095 WP_410011985.1 cystathionine gamma-synthase -
  ABKJ27_RS02710 (ABKJ27_02720) - 592198..593364 (+) 1167 WP_410011986.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72606.02 Da        Isoelectric Point: 4.9006

>NTDB_id=1007450 ABKJ27_RS02695 WP_410011983.1 588199..590157(+) (amiA) [Streptococcus sp. KHUD_011]
MKKSKAKYAALAGIVLSAGILLSACGSSSTGSKTYNYVYTSDPSSLNYLAENRATTNDIVVNLVDGLMENDQYGNYIPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVVGLDDYINGKTTDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSASFEGIKEKNKDNIIYSLQDATSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAAKQGVQEANSMKQSIEAALGAENVVIDIQQLTTEDYDN
TSYLAQTAAQKDYDLYNGGWGADYQDPSTYLDVFNLNSGGLLQNLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDLAKR
YEKYADIQAWLVDSALAIPNVSKGGTPTLRKVVPFSTPYSLAGNKGIESYKYLKVQDKTVTKEEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1007450 ABKJ27_RS02695 WP_410011983.1 588199..590157(+) (amiA) [Streptococcus sp. KHUD_011]
ATGAAAAAGTCTAAGGCCAAGTATGCGGCACTTGCAGGTATCGTGTTAAGTGCAGGTATTTTATTAAGCGCGTGTGGAAG
TTCTAGCACAGGGTCAAAAACATATAACTATGTTTATACCAGTGATCCGTCTAGTTTGAATTATCTAGCAGAAAACCGTG
CAACGACCAATGATATCGTGGTTAATTTGGTAGATGGGCTCATGGAAAATGACCAGTATGGAAACTATATTCCATCTTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTGCGTAAAGATGCTAAATGGTATACTGCAGA
TGGAGAAGAATATGCTCCTGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCAGCAGATAAAAAATCCGAAGCCT
TATACTTGGTTCAAGAATCCGTTGTTGGTTTAGATGACTATATCAACGGGAAAACAACAGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGACGACCAAACTGTTCAATATACCTTGACACGACCAGAATCTTATTGGAACTCAAAAACAACTTCAACCAT
TCTCTTCCCAGTCAATGCGGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTTATTGAATTTAAGAAAAATCCGAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTGAAATTGGCTTATTATGATGGTAGTGACCAAGATGCACTAGCTCGTAACTTTGTTGAGGG
AGCTTATAGTTATGCTCGCCTTTATCCAAATAGTGCAAGCTTTGAAGGTATTAAAGAAAAGAATAAGGACAATATCATTT
ATAGTTTACAAGATGCTACTTCTTACTTCTTAAACTTTAACCTAGATAGAAAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAGGAAGCGGTTCTTAATAAAAACTTCCGTCAAGCCATTAACTTTGCCTATGACCGTAC
AGCGTACGGGGCTCAATCTCAAGGAGAGGATGGTGCAACTAAGATTTTACGTAACCTGGTCGTTCCTCCAAACTTCGTAA
GTATCAATGGAAAAGACTTTGGTGAAGTAGTTGCGTCTAAAATGGTTAACTACGGTAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAGGATCCATACTACAATGCTGAAAAAGCCAAGGCTAAATTTGCTGAAGCTAAGAAAGAACTCCAAGCTAA
AGGAGTCCAATTCCCTATCCATTTGGACATGACAGTTGACCAAGCTGCTAAACAGGGTGTTCAAGAGGCAAATTCTATGA
AGCAATCTATTGAAGCAGCTTTAGGTGCAGAAAATGTTGTAATTGATATTCAACAACTTACTACTGAAGACTATGATAAT
ACAAGCTATTTGGCTCAGACAGCAGCTCAGAAGGATTATGATCTATACAATGGTGGTTGGGGTGCAGATTATCAAGATCC
TTCAACCTATCTTGATGTCTTCAACCTTAATTCTGGTGGTTTGTTGCAAAATCTAGGTTTAGAGCCAGGTGAAGCCAATG
ATAAGGCCAAGGCTGTTGGACTGGATGTCTACACTCAAATGTTGGAAGAAGCCAATAAGGAACAAGATCTTGCAAAACGC
TATGAAAAGTATGCTGATATCCAAGCGTGGTTGGTAGATAGCGCTTTAGCGATTCCAAATGTTTCTAAGGGTGGAACACC
AACATTGAGAAAAGTTGTTCCTTTCTCAACACCATATTCGTTGGCTGGTAATAAAGGTATCGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACTAAAGAAGAATATGAAAAAGCCAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.143

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

56.297

100

0.569
  amiA3 Streptococcus thermophilus LMD-9

55.994

100

0.566

Multiple sequence alignment