Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKJ27_RS01730 Genome accession   NZ_CP157578
Coordinates   352217..354196 (+) Length   659 a.a.
NCBI ID   WP_247949515.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 347217..359196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01715 (ABKJ27_01725) - 348521..349681 (+) 1161 WP_237447054.1 polysaccharide polymerase -
  ABKJ27_RS01720 (ABKJ27_01730) glf 349844..350941 (+) 1098 WP_247933462.1 UDP-galactopyranose mutase -
  ABKJ27_RS01725 (ABKJ27_01735) - 350966..352018 (+) 1053 WP_247949514.1 galactofuranosyltransferase -
  ABKJ27_RS01730 (ABKJ27_01740) amiA3 352217..354196 (+) 1980 WP_247949515.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS01735 (ABKJ27_01745) pbp1a 354338..356521 (-) 2184 WP_247949406.1 penicillin-binding protein PBP1A -
  ABKJ27_RS01740 (ABKJ27_01750) recU 356518..357114 (-) 597 WP_247949405.1 Holliday junction resolvase RecU -
  ABKJ27_RS01745 (ABKJ27_01755) - 357181..357708 (+) 528 WP_247949404.1 DUF1273 domain-containing protein -
  ABKJ27_RS01750 (ABKJ27_01760) gpsB 357781..358110 (+) 330 WP_000146534.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 73085.68 Da        Isoelectric Point: 4.7945

>NTDB_id=1007441 ABKJ27_RS01730 WP_247949515.1 352217..354196(+) (amiA3) [Streptococcus sp. KHUD_011]
MKTRKVLALAGVTLLAAGVLAACSGGSATKGEQTFAFTYETDPDNLNYLTTGKAATADITSNVIDGLLENDKYGNLIPSM
AEDWSVSKDGLTYTYKIRQDAKWYTSEGEEYAPVKAQDFVTGLKYATDKKSEALYLVQDSIKGLDAYAKGENKDFSQVGI
KALDDQTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKATDPSSILYNGPYLLKSIVTKSTVEFAKNPNYWDK
DNVHIDKVKLSFWDGQDTSKPAENFKDGSLSAARLYPTSASFAELEKEMKDNIVYTQQDSTTYVVGTNIDRQSYKYTSKT
SEEQKTSTKKALLNKDFRQAIAFGFDRTAYASQLNGQTGASKILRNIFVPPTFVQADGKNFGDMVKEKLVTYGDEWKDVN
LADAQDGLYNPEKAKAEFAKAKTALQAEGVQFPIHLDMPVDQTATTKVQRVQSMKQSLEATLGSDNVVIDIQQLQKDDLL
NVTLFAQTAAGEDWDLSDNVGWGPDFSDPSTYLDIIKPSVGENTRTYLGFDSGKDNEAAKKVGLNDYDKMVNEAGEETTD
ITKRYNKYAEAQAWLTDSALVIPTTSKTGRPILSKMVPFTLPFAFAGNKGTSDPLRYKYLELQDKAVTADEYQKAQDKWM
KEKEESNKKAQEELAKHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=1007441 ABKJ27_RS01730 WP_247949515.1 352217..354196(+) (amiA3) [Streptococcus sp. KHUD_011]
ATGAAAACAAGGAAAGTATTGGCTCTTGCGGGAGTCACTTTATTAGCAGCTGGTGTCTTAGCGGCTTGTTCTGGTGGTTC
TGCTACTAAAGGTGAGCAGACCTTCGCATTTACCTACGAGACAGACCCAGATAACCTCAACTATTTAACAACTGGTAAGG
CAGCGACTGCTGACATTACTAGTAATGTAATTGATGGATTGCTTGAAAATGATAAATACGGGAACCTTATTCCCTCAATG
GCAGAGGACTGGTCAGTTTCTAAGGATGGATTGACTTATACTTATAAGATTCGTCAGGATGCCAAGTGGTACACATCTGA
GGGAGAAGAGTATGCTCCTGTTAAGGCTCAGGACTTTGTGACAGGTCTTAAATATGCGACAGATAAGAAATCTGAAGCTC
TATACTTGGTACAGGATTCAATCAAAGGTTTGGATGCATACGCTAAAGGGGAAAATAAAGATTTCTCTCAAGTTGGGATT
AAAGCTCTTGACGATCAAACAGTCCAATACACTTTGAACAAACCTGAAAGTTTTTGGAATTCTAAAACAACTATGGGTGT
TTTAGCGCCAGTCAATGAAGAGTTTTTGAACTCAAAAGGGGATGATTTTGCCAAAGCTACGGATCCAAGTAGTATCTTGT
ATAATGGTCCTTATTTGTTGAAATCCATTGTAACCAAATCTACTGTTGAATTTGCAAAAAATCCTAACTACTGGGATAAA
GACAATGTCCATATTGACAAAGTCAAATTGTCATTCTGGGATGGTCAAGATACTAGTAAACCTGCAGAAAACTTTAAAGA
TGGTAGCCTTTCAGCAGCTCGTCTCTATCCAACAAGTGCAAGTTTCGCAGAACTTGAGAAAGAGATGAAGGACAATATTG
TCTATACGCAACAGGACTCTACGACTTATGTAGTAGGAACAAACATTGACCGTCAGTCCTATAAATATACTTCTAAGACT
AGTGAAGAACAAAAGACCTCAACTAAAAAGGCTTTGTTAAACAAGGATTTCCGTCAGGCTATTGCCTTTGGATTTGACCG
TACAGCCTATGCTTCTCAGCTAAATGGACAAACTGGAGCAAGCAAAATCTTACGTAATATCTTTGTTCCACCAACATTTG
TTCAAGCAGATGGAAAAAACTTTGGTGACATGGTCAAAGAAAAATTGGTGACTTACGGGGATGAATGGAAGGATGTGAAC
CTTGCTGATGCTCAAGATGGTCTCTATAATCCAGAGAAAGCCAAGGCAGAATTTGCTAAGGCTAAGACTGCTCTTCAGGC
AGAAGGAGTACAGTTCCCAATTCACCTAGACATGCCTGTTGACCAAACAGCAACTACAAAAGTTCAGCGTGTCCAATCTA
TGAAACAATCCTTGGAAGCAACTTTAGGATCTGATAATGTGGTTATTGATATTCAACAATTACAAAAAGATGATTTATTG
AATGTTACTTTATTTGCACAAACTGCTGCTGGTGAGGATTGGGATCTTTCTGATAACGTTGGATGGGGACCAGACTTCTC
AGATCCATCAACTTATCTTGATATCATCAAGCCTTCTGTAGGGGAAAATACGAGAACTTACCTAGGATTTGATTCAGGAA
AAGATAATGAGGCGGCTAAAAAGGTTGGTCTCAATGATTATGATAAAATGGTCAATGAAGCAGGGGAAGAAACTACAGAT
ATTACAAAACGGTATAACAAGTATGCCGAAGCTCAAGCATGGTTGACAGATAGTGCCTTAGTCATCCCAACAACTTCTAA
AACTGGTCGTCCAATCTTGTCTAAGATGGTACCATTCACTTTACCTTTCGCTTTCGCAGGTAACAAGGGGACAAGCGATC
CGCTTCGATACAAATATCTTGAACTTCAAGACAAGGCAGTCACAGCAGATGAATATCAAAAAGCTCAAGATAAATGGATG
AAAGAAAAAGAAGAATCCAATAAAAAAGCGCAAGAAGAACTTGCAAAACATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.091

100

0.592
  amiA Streptococcus salivarius strain HSISS4

59.091

100

0.592
  amiA3 Streptococcus thermophilus LMG 18311

58.636

100

0.587

Multiple sequence alignment