Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ABKJ27_RS01655 Genome accession   NZ_CP157578
Coordinates   335123..337081 (+) Length   652 a.a.
NCBI ID   WP_410011907.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 330123..342081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS01640 (ABKJ27_01650) - 331105..331587 (-) 483 WP_410011905.1 S-ribosylhomocysteine lyase -
  ABKJ27_RS01645 (ABKJ27_01655) - 331682..333166 (-) 1485 WP_023946637.1 DUF1846 domain-containing protein -
  ABKJ27_RS01650 (ABKJ27_01660) - 333319..334926 (+) 1608 WP_410011906.1 glycoside hydrolase family 13 protein -
  ABKJ27_RS01655 (ABKJ27_01665) amiA3 335123..337081 (+) 1959 WP_410011907.1 peptide ABC transporter substrate-binding protein Regulator
  ABKJ27_RS01660 (ABKJ27_01670) - 337271..338716 (+) 1446 WP_410011908.1 LCP family protein -
  ABKJ27_RS01665 (ABKJ27_01675) cps4B 338723..339454 (+) 732 WP_247949508.1 capsular polysaccharide biosynthesis protein Cps4B -
  ABKJ27_RS01670 (ABKJ27_01680) - 339463..340155 (+) 693 WP_410011909.1 CspC family polysaccharide chain length determinant protein -
  ABKJ27_RS01675 (ABKJ27_01685) - 340166..340867 (+) 702 WP_203212667.1 tyrosine-protein kinase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72472.53 Da        Isoelectric Point: 4.9770

>NTDB_id=1007440 ABKJ27_RS01655 WP_410011907.1 335123..337081(+) (amiA3) [Streptococcus sp. KHUD_011]
MTTKKRVLSAGLTFAAALLLAACGQSGSDTKTYSSTFSGNPTTFNYLLDYYADNTAIITNLVDGLLENDNHGNLVPSLAE
DWSVSSDGLTYTYKLRKDAKWFTADGEEYAPVKAQDFVTGIKYAVDNKSQAIDLIQNSIKGLNDYITGADSDFSKVGVKA
IDDHTVEYTLARPEPYWNSKTTNSILFPVNEEFLNSKGKDFGTLSPDSILYSGPYLLKDFTSKSSIEYVKNPHYYDHDKV
SIEHVKLAYFDGSDQELTIRNFESGAYSIAGVYPNSSNFAKTKEKYKDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTETAVLNKNFRQAVNFALDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVVASKLVNYGTEWSGINLAD
AQDAYFNKEKAQAKFAEAKKELASQGVTFPIHLDVAVDQTSKNAVTGMNSVKQTLESILGADNIVIDVQQLSTDDFNNVA
FLAPTPADRDYDLNFDGWVGDYQDPSTYLNPFNAEDGFYLKIFGLDAQEDKAKIASLGLDTYTKMLKDADSENKDVAKRY
EKYAEAQAWMIDNSLIMSAMSSGGTASVTKVTPFTRGYSLVGIKGDGNNYKYMKLQKDTVTTKQYEEAKAKWEQESKKAI
EKAQKEAENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1007440 ABKJ27_RS01655 WP_410011907.1 335123..337081(+) (amiA3) [Streptococcus sp. KHUD_011]
ATGACTACAAAAAAGCGTGTCCTTAGTGCAGGCCTGACTTTTGCAGCTGCTTTGCTTTTAGCTGCTTGCGGACAATCAGG
TTCAGATACAAAAACTTACTCATCAACCTTTAGTGGAAATCCAACTACATTTAACTACTTGTTAGACTACTACGCTGATA
ATACAGCCATCATTACCAACCTAGTTGATGGTTTGCTTGAAAATGACAACCACGGAAACCTAGTTCCATCTTTGGCAGAA
GACTGGTCTGTTTCAAGCGATGGCCTGACTTATACCTACAAACTGAGAAAAGATGCCAAATGGTTCACGGCTGACGGTGA
AGAGTACGCCCCAGTCAAGGCACAAGATTTTGTGACAGGTATCAAGTATGCAGTGGATAATAAATCCCAGGCCATTGACT
TGATTCAAAACTCGATCAAGGGCTTGAATGATTATATTACAGGAGCGGATTCTGACTTTTCTAAGGTTGGGGTGAAGGCC
ATTGACGACCATACTGTTGAGTATACTTTGGCACGCCCAGAGCCTTACTGGAATTCAAAAACAACCAATAGTATTCTTTT
CCCAGTGAATGAAGAGTTTCTAAACTCAAAAGGGAAAGATTTTGGGACCCTATCTCCAGATAGCATTCTCTACAGCGGAC
CTTATTTGTTAAAAGATTTCACATCAAAATCATCGATCGAGTATGTGAAGAATCCGCATTACTATGATCATGACAAAGTA
TCGATTGAACACGTAAAATTGGCTTACTTTGACGGCTCAGACCAAGAATTGACCATCCGTAACTTTGAAAGTGGAGCTTA
TTCTATCGCTGGGGTTTATCCAAATAGTTCTAACTTTGCCAAGACCAAGGAAAAATATAAGGATAATATCGTCTATAGCT
TGCAGGACAAGACTTCTTGGTATTTCAATTTCAACGTCAACCGTAAGGCCTACAATCACACTGCTAAAACGACAGATGAG
CAGAAGAAGTCAACTGAGACAGCTGTCTTGAACAAGAACTTCCGTCAAGCAGTGAACTTTGCCTTGGATCGCACAGCCTA
TTCTGCTCAGTCAAATGGGGAAGAAGCAGCTAGCAAGACCCTTCGTAACACCCTAGTGCCTCCTACATTTGTCCAAGTCG
GAGACAAGACCTTTGGAGAAGTAGTGGCTTCTAAATTGGTTAACTATGGCACAGAATGGTCAGGTATTAACTTGGCAGAT
GCTCAGGATGCCTATTTCAACAAAGAAAAAGCCCAAGCAAAATTTGCGGAAGCTAAAAAAGAATTGGCAAGTCAAGGTGT
GACCTTCCCAATTCACTTGGATGTGGCAGTTGATCAGACGAGTAAAAATGCCGTGACAGGCATGAACTCAGTTAAGCAGA
CCCTTGAGTCAATTTTGGGTGCTGATAACATTGTCATTGACGTTCAACAACTTTCAACAGATGATTTTAACAACGTAGCC
TTCTTGGCACCGACACCAGCTGATCGTGACTATGATTTGAACTTTGATGGTTGGGTAGGTGACTACCAAGATCCATCAAC
TTATCTCAATCCTTTCAATGCAGAGGATGGATTCTACCTCAAGATCTTTGGTCTAGATGCTCAGGAAGATAAAGCTAAGA
TTGCTAGCTTGGGGCTTGATACTTACACCAAGATGCTCAAAGATGCAGATAGTGAAAATAAAGATGTAGCCAAACGATAT
GAAAAATATGCTGAAGCACAGGCTTGGATGATTGACAATTCTCTGATTATGTCAGCTATGTCAAGTGGTGGAACAGCATC
TGTAACCAAAGTAACGCCATTTACAAGAGGGTATTCACTGGTCGGCATCAAGGGTGATGGCAATAACTACAAGTACATGA
AACTGCAAAAAGATACTGTGACAACCAAACAGTATGAAGAAGCTAAGGCCAAATGGGAGCAAGAAAGCAAAAAAGCAATC
GAAAAAGCTCAAAAAGAAGCAGAAAATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

50.685

100

0.511
  amiA Streptococcus salivarius strain HSISS4

50.305

100

0.506
  amiA3 Streptococcus thermophilus LMG 18311

50.228

100

0.506

Multiple sequence alignment