Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BACILLUS_RS27280 Genome accession   NZ_CP157504
Coordinates   5188145..5188507 (-) Length   120 a.a.
NCBI ID   WP_016765913.1    Uniprot ID   A0A1I2XGS5
Organism   Priestia megaterium strain FA-05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5183653..5194875 5188145..5188507 within 0


Gene organization within MGE regions


Location: 5183653..5194875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BACILLUS_RS27270 (BACILLUS_005459) - 5183653..5186283 (+) 2631 WP_047933499.1 DEAD/DEAH box helicase -
  BACILLUS_RS27275 (BACILLUS_005460) - 5186581..5187627 (+) 1047 WP_047931252.1 C40 family peptidase -
  BACILLUS_RS27280 (BACILLUS_005461) ssbB 5188145..5188507 (-) 363 WP_016765913.1 single-stranded DNA-binding protein Machinery gene
  BACILLUS_RS27285 (BACILLUS_005462) - 5188604..5189041 (+) 438 WP_013085451.1 YwpF-like family protein -
  BACILLUS_RS27290 (BACILLUS_005464) - 5189565..5189987 (+) 423 WP_034648293.1 helix-turn-helix transcriptional regulator -
  BACILLUS_RS27295 (BACILLUS_005465) fabZ 5190016..5190450 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BACILLUS_RS27300 (BACILLUS_005466) - 5190534..5191355 (-) 822 WP_034648291.1 flagellar hook-basal body protein -
  BACILLUS_RS27305 (BACILLUS_005467) - 5191379..5192203 (-) 825 WP_095380197.1 flagellar hook-basal body protein -
  BACILLUS_RS27310 (BACILLUS_005468) - 5192318..5193319 (-) 1002 WP_013085455.1 rod shape-determining protein -
  BACILLUS_RS27315 (BACILLUS_005469) spoIIID 5193506..5193769 (-) 264 WP_013059792.1 sporulation transcriptional regulator SpoIIID -
  BACILLUS_RS27320 (BACILLUS_005470) - 5194045..5194875 (-) 831 WP_016765919.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13472.19 Da        Isoelectric Point: 7.1647

>NTDB_id=1007362 BACILLUS_RS27280 WP_016765913.1 5188145..5188507(-) (ssbB) [Priestia megaterium strain FA-05]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSGFSSFDSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=1007362 BACILLUS_RS27280 WP_016765913.1 5188145..5188507(-) (ssbB) [Priestia megaterium strain FA-05]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACAAAAAAACCTGAGCTTAGATATACCCATGAAGGGATTGCAGTATC
TACTATTACTTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACGGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGTGTAGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCTGTTAAGTTTTTAAGTGGAAAGCC
ATCCGGTTTTTCTTCATTTGATTCAAATCAACAAGAAGAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2XGS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.813

89.167

0.533
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508
  ssb Latilactobacillus sakei subsp. sakei 23K

52.83

88.333

0.467

Multiple sequence alignment