Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ABLU28_RS03620 Genome accession   NZ_CP157495
Coordinates   713786..714202 (+) Length   138 a.a.
NCBI ID   WP_021216554.1    Uniprot ID   A0AAC9R430
Organism   Lactococcus lactis strain 2B-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 708786..719202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU28_RS03605 (ABLU28_03605) comGA 711509..712447 (+) 939 WP_058212859.1 competence type IV pilus ATPase ComGA Machinery gene
  ABLU28_RS03610 (ABLU28_03610) comGB 712395..713414 (+) 1020 Protein_666 competence type IV pilus assembly protein ComGB -
  ABLU28_RS03615 (ABLU28_03615) comGC 713428..713811 (+) 384 WP_010906318.1 competence type IV pilus major pilin ComGC Machinery gene
  ABLU28_RS03620 (ABLU28_03620) comGD 713786..714202 (+) 417 WP_021216554.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABLU28_RS03625 (ABLU28_03625) comGE 714174..714470 (+) 297 WP_010906316.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABLU28_RS03630 (ABLU28_03630) comGF 714433..714879 (+) 447 WP_029344525.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABLU28_RS03635 (ABLU28_03635) comGG 714918..715202 (+) 285 WP_010906314.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABLU28_RS03640 (ABLU28_03640) - 715283..715720 (+) 438 WP_058213216.1 zinc-dependent MarR family transcriptional regulator -
  ABLU28_RS03645 (ABLU28_03645) - 715717..716559 (+) 843 WP_015427160.1 metal ABC transporter substrate-binding protein -
  ABLU28_RS03650 (ABLU28_03650) - 716736..717473 (+) 738 WP_012898617.1 metal ABC transporter ATP-binding protein -
  ABLU28_RS03655 (ABLU28_03655) - 717466..718275 (+) 810 WP_014570791.1 metal ABC transporter permease -
  ABLU28_RS03660 (ABLU28_03660) - 718314..719180 (-) 867 WP_058213299.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15902.69 Da        Isoelectric Point: 7.9826

>NTDB_id=1007181 ABLU28_RS03620 WP_021216554.1 713786..714202(+) (comGD) [Lactococcus lactis strain 2B-1]
MKNEILMTKAFTLLESLLVLLIISFITTLFSLEIIQTIHLFKGELFVLQFENFYKRSQEDAALLQKSESLVAKNQELICE
DRSITIPKEVAVKDFTVKFDDKGENSSLQKLTISLPYEKKFITYQLEIGSGKFKKKIS

Nucleotide


Download         Length: 417 bp        

>NTDB_id=1007181 ABLU28_RS03620 WP_021216554.1 713786..714202(+) (comGD) [Lactococcus lactis strain 2B-1]
ATGAAGAACGAAATTTTAATGACTAAAGCATTTACTTTACTAGAGTCTCTTCTAGTTTTGTTGATTATTTCTTTTATCAC
AACTCTTTTTTCTTTAGAAATAATACAAACAATCCATCTTTTTAAGGGAGAATTGTTTGTTCTTCAATTTGAAAATTTCT
ATAAAAGGAGTCAAGAAGATGCTGCACTGCTTCAAAAATCTGAAAGTTTAGTTGCTAAAAATCAAGAATTAATCTGTGAA
GATAGAAGTATCACAATTCCAAAGGAGGTAGCAGTTAAAGATTTTACAGTTAAATTTGATGATAAGGGAGAGAATTCTAG
CTTACAAAAACTCACAATTTCTTTACCTTACGAAAAAAAGTTCATCACTTATCAATTGGAGATAGGCAGTGGAAAATTTA
AAAAGAAAATCAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

65.942

100

0.659
  comYD Streptococcus gordonii str. Challis substr. CH1

40.458

94.928

0.384
  comYD Streptococcus mutans UA140

40.625

92.754

0.377
  comYD Streptococcus mutans UA159

40.625

92.754

0.377

Multiple sequence alignment