Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   GPW69_RS02825 Genome accession   NZ_LR738724
Coordinates   548375..549058 (+) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 543375..554058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS02805 - 543459..544970 (+) 1512 WP_074391532.1 ABC transporter permease/substrate-binding protein -
  GPW69_RS02810 - 544980..545741 (+) 762 WP_074391531.1 nuclear transport factor 2 family protein -
  GPW69_RS02815 - 545886..547010 (+) 1125 WP_074391530.1 aminotransferase -
  GPW69_RS02820 - 547024..548205 (-) 1182 WP_074391529.1 DUF2974 domain-containing protein -
  GPW69_RS02825 braR 548375..549058 (+) 684 WP_002936735.1 response regulator transcription factor Regulator
  GPW69_RS02830 - 549051..550043 (+) 993 WP_074391528.1 sensor histidine kinase -
  GPW69_RS02835 - 550139..550897 (+) 759 WP_074391527.1 ABC transporter ATP-binding protein -
  GPW69_RS02840 - 550899..552902 (+) 2004 WP_074391526.1 ABC transporter permease -
  GPW69_RS02845 - 553097..553255 (+) 159 WP_171841466.1 hypothetical protein -
  GPW69_RS02850 - 553252..553569 (+) 318 WP_024408398.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=1007143 GPW69_RS02825 WP_002936735.1 548375..549058(+) (braR) [Streptococcus suis isolate 9401240]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=1007143 GPW69_RS02825 WP_002936735.1 548375..549058(+) (braR) [Streptococcus suis isolate 9401240]
ATGCAGAAAATTCTTCTTATCGAGGACGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAAGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTTGGTGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCTCTAGACTTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGGGTGCTTTTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTTAACATCGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383