Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   GPW68_RS00365 Genome accession   NZ_LR738723
Coordinates   63052..63642 (+) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis isolate GD-0088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58052..68642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW68_RS00355 - 59435..60958 (+) 1524 WP_024405860.1 quinol oxidase -
  GPW68_RS00360 hexB 61076..63013 (+) 1938 WP_012774891.1 DNA mismatch repair endonuclease MutL Machinery gene
  GPW68_RS00365 ruvA 63052..63642 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  GPW68_RS00375 - 64367..64936 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  GPW68_RS00380 cinA 64973..66154 (+) 1182 WP_023369043.1 competence/damage-inducible protein A Machinery gene
  GPW68_RS00385 recA 66206..67354 (+) 1149 WP_023369045.1 recombinase RecA Machinery gene
  GPW68_RS00390 spx 67590..67988 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  GPW68_RS00395 - 68088..68354 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=1007011 GPW68_RS00365 WP_011921679.1 63052..63642(+) (ruvA) [Streptococcus suis isolate GD-0088]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=1007011 GPW68_RS00365 WP_011921679.1 63052..63642(+) (ruvA) [Streptococcus suis isolate GD-0088]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGTACCAACGACACCGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408