Detailed information NTG1006964

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLB95_RS01535
• Genome accession: NZ_CP157451
• Coordinates: 321959..322819 (-)
• Length: 286 a.a.
• NCBI ID: WP_005016989.1
• Uniprot ID: A0A062C1I7
• Organism: Acinetobacter radioresistens strain XH1688
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 316959..327819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB95_RS01510 (ABLB95_01510)	-	319002..319139 (+)	138	WP_005405135.1	hypothetical protein	-
ABLB95_RS01515 (ABLB95_01515)	-	319207..319530 (+)	324	WP_005016998.1	pyrimidine/purine nucleoside phosphorylase	-
ABLB95_RS01520 (ABLB95_01520)	rlmB	319634..320389 (+)	756	WP_017400663.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLB95_RS01525 (ABLB95_01525)	-	320414..321349 (+)	936	WP_348908585.1	DMT family transporter	-
ABLB95_RS01530 (ABLB95_01530)	coaE	321346..321957 (-)	612	WP_005016991.1	dephospho-CoA kinase	-
ABLB95_RS01535 (ABLB95_01535)	pilD	321959..322819 (-)	861	WP_005016989.1	A24 family peptidase	Machinery gene
ABLB95_RS01540 (ABLB95_01540)	pilC	322819..324045 (-)	1227	WP_005016988.1	type II secretion system F family protein	Machinery gene
ABLB95_RS01545 (ABLB95_01545)	pilB	324075..325784 (-)	1710	WP_348908584.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLB95_RS01550 (ABLB95_01550)	tpiA	326073..326867 (+)	795	WP_005023075.1	triose-phosphate isomerase	-
ABLB95_RS01555 (ABLB95_01555)	secG	326878..327207 (+)	330	WP_005023077.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31915.24 Da
• Isoelectric Point: 7.4686

>NTDB_id=1006964 ABLB95_RS01535 WP_005016989.1 321959..322819(-) (pilD) [Acinetobacter radioresistens strain XH1688]
MQELITLLSNNPTALYIVVGLFSLCIGSFLNVVILRTPKMMEQEWRNECQLLLHPDQPLIDETKLTLSYPASTCPNCHTP
IRWYQNLPLVSWLLLRGKCGQCQNPISIRYPLVELLTALCSLIVVAVYGPTLQMLFGLLLTWALITLTFIDFDTQLLPDR
YTLPLAALGLALNSYALYTSASSAIWGYVIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIVLLKIRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006964 ABLB95_RS01535 WP_005016989.1 321959..322819(-) (pilD) [Acinetobacter radioresistens strain XH1688]
ATGCAAGAATTAATTACCTTATTAAGTAATAACCCGACTGCGCTCTACATTGTGGTTGGGCTTTTCAGTCTATGTATTGG
CAGTTTTTTAAATGTCGTTATTCTTCGCACTCCTAAAATGATGGAGCAGGAATGGCGCAATGAATGTCAGTTGTTGCTTC
ATCCAGATCAGCCCCTAATTGATGAAACAAAACTCACGCTCAGCTATCCGGCTTCTACCTGTCCCAACTGTCATACGCCG
ATTCGCTGGTATCAGAATCTGCCTTTAGTCAGCTGGCTGCTACTCAGAGGCAAATGTGGTCAATGCCAGAATCCGATCAG
TATCCGTTACCCTCTAGTTGAACTTTTAACTGCTCTGTGTTCACTTATTGTAGTAGCTGTCTATGGCCCTACCCTGCAAA
TGCTATTTGGTCTGTTACTGACTTGGGCATTAATTACCCTGACCTTCATCGATTTTGATACACAACTGCTTCCAGACCGG
TATACCCTGCCGCTTGCCGCCCTAGGCCTAGCTCTGAACAGTTATGCATTATATACCTCGGCAAGCTCTGCTATTTGGGG
TTATGTGATTGGGTTTTTATGCTTATGGATTGTATATTATCTGTTTAAAGTCATCACCGGTAAAGAAGGCATGGGATACG
GGGACTTTAAGTTACTGGCCGCACTCGGAGCCTGGATGGGTCCTTTAATGCTGCCTTTAATTGTGCTACTTTCATCTTTA
GTCGGGGCAATTATTGGTATCGTACTGCTCAAGATTCGCAAGGAAAACCAGCCTTTTGCCTTTGGTCCCTATATTGCGAT
TGCCGGCTGGATCGCTTTTTTATGGGGTGAGCAAATTATGAAAATTTATCTGGGAGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A062C1I7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	79.72	100	0.797
pilD	Acinetobacter baumannii D1279779	78.671	100	0.787
pilD	Vibrio cholerae strain A1552	53.875	94.755	0.51
pilD	Vibrio campbellii strain DS40M4	51.087	96.503	0.493
pilD	Neisseria gonorrhoeae MS11	47.312	97.552	0.462