Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABLB95_RS01120 Genome accession   NZ_CP157451
Coordinates   232795..234210 (-) Length   471 a.a.
NCBI ID   WP_005405846.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 227795..239210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS01105 (ABLB95_01105) lptG 228848..229918 (+) 1071 WP_005017161.1 LPS export ABC transporter permease LptG -
  ABLB95_RS01110 (ABLB95_01110) gpmI 230037..231587 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLB95_RS01115 (ABLB95_01115) - 231607..232794 (+) 1188 WP_348909001.1 S41 family peptidase -
  ABLB95_RS01120 (ABLB95_01120) pilR 232795..234210 (-) 1416 WP_005405846.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB95_RS01125 (ABLB95_01125) pilS 234235..235800 (-) 1566 WP_284909088.1 PAS domain-containing sensor histidine kinase Regulator
  ABLB95_RS01130 (ABLB95_01130) - 235815..236450 (-) 636 WP_005017150.1 response regulator -
  ABLB95_RS01135 (ABLB95_01135) pbpG 236669..237700 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB95_RS01140 (ABLB95_01140) thrC 237788..238933 (-) 1146 WP_005017146.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 52975.00 Da        Isoelectric Point: 6.1946

>NTDB_id=1006960 ABLB95_RS01120 WP_005405846.1 232795..234210(-) (pilR) [Acinetobacter radioresistens strain XH1688]
MTNQQALILLVDDEEDLCTLMQMSLAKINIRTHIAHGLEQAKKLFQQHAYDACLTDLNLPDGNGLELVQYVSQLYPCTPI
AVLTAYGNMEIAISALKAGAFDFVSKPVNQAHLQQLVQKALNTPQSAQQLVQDALENRMLIGTSLPIQQLKIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSDGPFIAINCGAIPGDLMESELFGHKKGSFTGASQDKQGLIYSAHGGSLFLDE
IAELPLAMQVKLLRAVQEKKIRPIGSDQEIDVDFRVISASHQDLEILVQQGKFRQDLFFRIHVMDIVLPPLREREDDILL
LAKHFIQEVCKEWDIPNKILTERGQQFLMQQYFPGNVRELRNIIERAITLSDNEYIDLPQLQSAPLRNVQNFVAGQINHE
PLTDQVIPLSPHRKIPAEGLEQYLENIEKEVLLTALNQTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=1006960 ABLB95_RS01120 WP_005405846.1 232795..234210(-) (pilR) [Acinetobacter radioresistens strain XH1688]
ATGACAAATCAGCAGGCACTTATATTATTGGTCGATGATGAGGAAGACCTTTGTACTTTAATGCAAATGTCTTTGGCCAA
AATCAATATCAGGACCCACATTGCACATGGACTGGAGCAGGCAAAAAAACTTTTTCAGCAACATGCTTATGATGCCTGCC
TGACTGATCTGAATTTGCCAGATGGCAATGGGCTGGAATTAGTCCAGTATGTTTCACAACTTTATCCTTGTACACCGATC
GCCGTTTTGACCGCCTATGGCAATATGGAAATTGCTATTTCAGCACTCAAGGCTGGAGCTTTTGATTTTGTCAGTAAACC
TGTCAATCAGGCCCATCTACAGCAACTGGTTCAAAAAGCACTCAATACACCTCAATCGGCTCAGCAACTGGTTCAAGATG
CTTTGGAAAATCGGATGTTGATTGGCACTTCTTTGCCAATCCAGCAGCTCAAAATTGCCTTGAAAAAAATTGCCCGCTCA
CAGGCACCGGTTTTTATTACTGGTGAATCCGGTACAGGCAAGGAAGTAGTGGCTAATCTGGTGCATCGCTTAAGTAACCG
CAGTGACGGGCCATTTATTGCTATTAACTGTGGCGCTATTCCAGGCGATCTCATGGAAAGTGAGCTGTTTGGACACAAAA
AGGGAAGTTTTACCGGCGCAAGTCAGGACAAACAGGGACTAATTTATTCTGCCCATGGCGGTAGCTTGTTTCTGGATGAA
ATTGCTGAACTGCCTCTGGCCATGCAGGTTAAATTACTCCGTGCCGTACAGGAAAAGAAAATCCGTCCGATTGGTAGTGA
TCAGGAAATTGATGTGGATTTTCGTGTAATTAGTGCCAGTCATCAGGACCTGGAAATACTAGTACAGCAAGGTAAGTTCC
GGCAGGATCTCTTCTTTCGGATTCATGTCATGGATATTGTTCTGCCCCCCCTGCGTGAACGTGAAGATGACATTCTTCTG
CTGGCTAAACATTTTATTCAGGAAGTATGTAAGGAGTGGGATATTCCCAATAAAATTCTGACCGAGCGCGGCCAGCAATT
TCTGATGCAGCAATATTTTCCGGGGAATGTGCGTGAACTGCGTAATATTATCGAACGTGCGATCACATTAAGTGATAATG
AATATATTGATTTACCCCAACTACAAAGTGCACCTTTGCGCAATGTCCAAAATTTTGTAGCAGGCCAAATTAATCATGAA
CCGCTAACGGACCAAGTCATTCCGTTGAGCCCTCACAGGAAAATTCCTGCCGAAGGCCTGGAGCAATATCTGGAAAATAT
TGAAAAAGAAGTTCTGCTCACTGCACTGAACCAGACACACTGGAACCGGACTTTGGCTGCTAAAAAACTTGGAATGAGTT
TTCGCTCTTTACGTTATCGACTTAAAAAATTTGGGCTGGATACCGATGATGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.788

100

0.749
  pilR Pseudomonas aeruginosa PAK

48.401

99.575

0.482

Multiple sequence alignment