Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABLB95_RS01125 Genome accession   NZ_CP157451
Coordinates   234235..235800 (-) Length   521 a.a.
NCBI ID   WP_284909088.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain XH1688     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 229235..240800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB95_RS01110 (ABLB95_01110) gpmI 230037..231587 (+) 1551 WP_005022960.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLB95_RS01115 (ABLB95_01115) - 231607..232794 (+) 1188 WP_348909001.1 S41 family peptidase -
  ABLB95_RS01120 (ABLB95_01120) pilR 232795..234210 (-) 1416 WP_005405846.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB95_RS01125 (ABLB95_01125) pilS 234235..235800 (-) 1566 WP_284909088.1 PAS domain-containing sensor histidine kinase Regulator
  ABLB95_RS01130 (ABLB95_01130) - 235815..236450 (-) 636 WP_005017150.1 response regulator -
  ABLB95_RS01135 (ABLB95_01135) pbpG 236669..237700 (+) 1032 WP_005017149.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB95_RS01140 (ABLB95_01140) thrC 237788..238933 (-) 1146 WP_005017146.1 threonine synthase -
  ABLB95_RS01145 (ABLB95_01145) - 238991..240295 (-) 1305 WP_005022971.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59297.18 Da        Isoelectric Point: 5.8116

>NTDB_id=1006961 ABLB95_RS01125 WP_284909088.1 234235..235800(-) (pilS) [Acinetobacter radioresistens strain XH1688]
MAPLRPVSLLQTIYRLGEWYSAYRLVLALSLNIIFALTLETVAQDYQHPDLYFYSIVGYALISCIQLIFYKILPFEISKQ
LILLFIVDVCCFSLLNFALGGPNLHLSLLFVVTVFAATILLRPQLALIITLVAVISVIYQQVVGSFFNSSHLNSISNSAL
LAFLFFVMYGIGQIAVQRFRLLENLNFYQSIELNQLQNINRAILEQIEVGYLVLDEQQQVILNNPAACSLLGIPPIFTDE
KYFLRKLQPDLYTLIRFSDLKDGERFLFESQLSPFSVDIQVQKLLVPHQALTLLILQDAQKIKQQVQQLKLMALGQLSAS
IAHEIRNPLAAIVQANELLADSQPEQLQMLTGMIDRQSQRIDKIIHDTLNMARNSPTEPAKIRLSGFLAQVLNEDLIDIK
QAVQLQIEQDIWIYFDELQLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQLFKPFFSTE
INGTGLGLYLSHSFCEANHAKLTYVKQQQGACFRIECSIIY

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=1006961 ABLB95_RS01125 WP_284909088.1 234235..235800(-) (pilS) [Acinetobacter radioresistens strain XH1688]
ATGGCCCCCCTACGCCCCGTCTCGCTGCTTCAGACCATCTACCGTCTGGGAGAGTGGTACAGTGCTTATCGTCTTGTTTT
AGCACTTAGTCTTAATATTATTTTTGCACTAACCCTTGAGACTGTTGCTCAAGACTACCAGCATCCTGACCTGTACTTTT
ATAGTATTGTCGGTTATGCCCTGATCAGCTGTATCCAGCTGATTTTTTATAAAATTCTACCTTTTGAAATTTCGAAGCAG
CTTATTTTACTCTTTATAGTAGATGTATGCTGTTTTAGCCTGCTAAATTTTGCACTGGGTGGACCCAATCTGCACTTAAG
TCTACTTTTTGTAGTGACGGTCTTTGCCGCAACAATTTTACTCAGGCCCCAGCTTGCTTTAATTATCACACTGGTTGCTG
TAATTAGTGTGATTTACCAGCAGGTAGTAGGAAGTTTTTTTAACAGTTCCCATCTCAACAGTATCAGTAATAGTGCTTTA
TTAGCTTTTTTATTTTTTGTGATGTATGGCATTGGACAGATTGCTGTACAGCGGTTTCGCCTTTTGGAAAACCTGAATTT
TTATCAGTCCATTGAGCTTAACCAGCTACAGAATATTAACCGGGCTATTTTGGAGCAAATTGAGGTAGGCTATTTAGTTT
TAGATGAGCAGCAGCAGGTGATTTTAAATAATCCGGCAGCCTGTTCATTACTAGGTATTCCACCGATTTTTACTGATGAA
AAGTATTTTCTACGTAAACTCCAGCCAGACCTGTATACGCTTATCCGGTTTAGTGACTTAAAAGATGGTGAAAGGTTCCT
GTTTGAATCACAGCTTTCACCTTTCAGTGTCGATATACAGGTTCAGAAACTTCTTGTGCCTCATCAAGCTTTAACCTTGT
TGATATTGCAGGATGCCCAGAAAATCAAGCAGCAGGTACAACAATTAAAGCTGATGGCACTGGGACAGCTTTCGGCCAGT
ATTGCCCATGAAATTCGTAATCCTTTGGCAGCTATTGTTCAGGCTAATGAATTATTAGCTGACAGCCAGCCAGAACAGTT
GCAGATGCTCACAGGCATGATTGACCGGCAGTCACAACGTATTGACAAGATTATCCATGATACCTTGAATATGGCACGTA
ACAGTCCGACTGAGCCTGCTAAAATCAGATTATCAGGTTTTCTTGCCCAAGTTTTAAATGAAGACCTGATCGATATAAAA
CAGGCTGTACAGCTACAGATTGAGCAGGATATCTGGATTTATTTTGATGAACTCCAGCTACGTCAAGTGCTTATTAATCT
GATCCGTAATGCATTAAGGCATAATTCAGCAGAGCAGTCTTTTATTATTATACGGGTACATGGCACAGAAGAACGCGGCT
GGATTGATGTTATTGATTTTGGTCAAGGCGTAGCAGAGCGCGATATTTCACAATTGTTTAAACCCTTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTATATTTATCTCACAGTTTTTGTGAGGCTAATCATGCAAAACTTACTTATGTCAAGCA
ACAACAAGGCGCATGTTTTCGAATCGAATGCTCCATTATTTATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

63.107

98.848

0.624

Multiple sequence alignment