Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABLC01_RS15315 Genome accession   NZ_CP157442
Coordinates   3206779..3207183 (-) Length   134 a.a.
NCBI ID   WP_032057521.1    Uniprot ID   -
Organism   Acinetobacter pittii strain XH1728     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3201779..3212183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC01_RS15285 (ABLC01_15280) - 3201863..3202132 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABLC01_RS15290 (ABLC01_15285) rapZ 3202129..3202980 (-) 852 WP_002117179.1 RNase adapter RapZ -
  ABLC01_RS15295 (ABLC01_15290) panC 3203004..3203852 (-) 849 WP_032057513.1 pantoate--beta-alanine ligase -
  ABLC01_RS15300 (ABLC01_15295) panB 3203856..3204665 (-) 810 WP_032057515.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABLC01_RS15305 (ABLC01_15300) folK 3204711..3205193 (-) 483 WP_032057517.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABLC01_RS15310 (ABLC01_15305) pcnB 3205190..3206653 (-) 1464 WP_032057519.1 polynucleotide adenylyltransferase PcnB -
  ABLC01_RS15315 (ABLC01_15310) comEA 3206779..3207183 (-) 405 WP_032057521.1 ComEA family DNA-binding protein Machinery gene
  ABLC01_RS15320 (ABLC01_15315) mazG 3207152..3207958 (-) 807 WP_348887148.1 nucleoside triphosphate pyrophosphohydrolase -
  ABLC01_RS15325 (ABLC01_15320) - 3208071..3208844 (+) 774 WP_014208394.1 SDR family oxidoreductase -
  ABLC01_RS15330 (ABLC01_15325) relA 3208891..3211197 (-) 2307 WP_002117181.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15518.74 Da        Isoelectric Point: 10.5869

>NTDB_id=1006890 ABLC01_RS15315 WP_032057521.1 3206779..3207183(-) (comEA) [Acinetobacter pittii strain XH1728]
MQLSMNLWKNKHNIFIVLFWSLISSTFIQAQSFDQNFKEWKTKQQRYDQKLSMQHSSHSNSPKSSVMTDSSGQIHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1006890 ABLC01_RS15315 WP_032057521.1 3206779..3207183(-) (comEA) [Acinetobacter pittii strain XH1728]
ATGCAGCTCAGCATGAATCTTTGGAAGAATAAGCACAATATTTTCATTGTTTTATTTTGGAGCCTGATTTCTTCAACCTT
TATTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGACTAAACAGCAGAGGTATGATCAGAAGTTGAGCATGC
AGCATTCCTCTCATTCTAACAGTCCAAAAAGTTCAGTTATGACTGATTCGTCAGGGCAAATTCACTTGAATCAAGCCAAT
ATTGATGAGCTCCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCAATTGTGGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCCGCCATTTTTGAAAAGAATAAAACGCGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396

Multiple sequence alignment