Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABLC00_RS16895 Genome accession   NZ_CP157432
Coordinates   3608140..3608562 (-) Length   140 a.a.
NCBI ID   WP_006582564.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3603140..3613562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS16865 (ABLC00_16865) - 3603645..3604679 (+) 1035 WP_002051740.1 lipase secretion chaperone -
  ABLC00_RS16870 (ABLC00_16870) - 3604794..3605735 (+) 942 WP_080594638.1 triacylglycerol lipase -
  ABLC00_RS16875 (ABLC00_16875) rplS 3605788..3606156 (-) 369 WP_002051668.1 50S ribosomal protein L19 -
  ABLC00_RS16880 (ABLC00_16880) trmD 3606372..3607127 (-) 756 WP_006582565.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABLC00_RS16885 (ABLC00_16885) rimM 3607174..3607722 (-) 549 WP_004711694.1 ribosome maturation factor RimM -
  ABLC00_RS16890 (ABLC00_16890) rpsP 3607742..3607993 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABLC00_RS16895 (ABLC00_16895) comF 3608140..3608562 (-) 423 WP_006582564.1 type IV pilin protein Machinery gene
  ABLC00_RS16900 (ABLC00_16900) - 3608562..3609125 (-) 564 WP_006582563.1 type IV pilin protein -
  ABLC00_RS16905 (ABLC00_16905) - 3609137..3612748 (-) 3612 WP_006582562.1 pilus assembly protein -
  ABLC00_RS16910 (ABLC00_16910) - 3612748..3613437 (-) 690 WP_006582561.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15628.70 Da        Isoelectric Point: 9.2622

>NTDB_id=1006815 ABLC00_RS16895 WP_006582564.1 3608140..3608562(-) (comF) [Acinetobacter nosocomialis strain XH1679]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYRIRTNRADVQNEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQVGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=1006815 ABLC00_RS16895 WP_006582564.1 3608140..3608562(-) (comF) [Acinetobacter nosocomialis strain XH1679]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAGAATTCGGACGAATCGTGCAGATGTGCAAAATGAAATGATGCAAACAGCGCAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGTTGGAAATGGCACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-106)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

52.778

100

0.543
  pilE Acinetobacter baumannii D1279779

51.471

97.143

0.5
  pilA2 Legionella pneumophila str. Paris

39.85

95

0.379
  pilA2 Legionella pneumophila strain ERS1305867

38.686

97.857

0.379

Multiple sequence alignment