Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABLC00_RS05860 Genome accession   NZ_CP157432
Coordinates   1249780..1250487 (-) Length   235 a.a.
NCBI ID   WP_002156798.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1244780..1255487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS05840 (ABLC00_05840) - 1245849..1247168 (+) 1320 WP_002156866.1 adenylosuccinate synthase -
  ABLC00_RS05845 (ABLC00_05845) - 1247295..1247612 (+) 318 WP_002156849.1 hypothetical protein -
  ABLC00_RS05850 (ABLC00_05850) - 1247729..1248511 (+) 783 WP_017393664.1 M48 family metallopeptidase -
  ABLC00_RS05855 (ABLC00_05855) - 1248570..1249619 (-) 1050 WP_004888034.1 NADP(H)-dependent aldo-keto reductase -
  ABLC00_RS05860 (ABLC00_05860) crp 1249780..1250487 (-) 708 WP_002156798.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABLC00_RS05865 (ABLC00_05865) - 1250928..1251350 (+) 423 WP_001195082.1 OsmC family protein -
  ABLC00_RS05870 (ABLC00_05870) - 1251441..1251866 (+) 426 WP_016804468.1 GNAT family N-acetyltransferase -
  ABLC00_RS05875 (ABLC00_05875) - 1251863..1252669 (-) 807 WP_033846191.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26537.16 Da        Isoelectric Point: 4.6625

>NTDB_id=1006802 ABLC00_RS05860 WP_002156798.1 1249780..1250487(-) (crp) [Acinetobacter nosocomialis strain XH1679]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1006802 ABLC00_RS05860 WP_002156798.1 1249780..1250487(-) (crp) [Acinetobacter nosocomialis strain XH1679]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
GCGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAGCGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCAGA
AATTTCATATGACAACTTCCATGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTTGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACTGACCTTGCCTTCATTGATGTGTCTGGTCGTATTGCGCGTTGCTTAATCGAC
TTATCTTCACAACCAGAGGCAATGATCTTGCCGAATGGTCGTCAAATTCGTATTACCCGTCAAGAAATTGGACGTATTGT
CGGTTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATCCAGACAGATGGTAAGGCTA
TTCTTATTTTTGATGCATCATTAGAAGAAACTCCTGTCACTGACGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment