Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ABLC00_RS00905 Genome accession   NZ_CP157432
Coordinates   189271..190401 (-) Length   376 a.a.
NCBI ID   WP_033846988.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain XH1679     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 184271..195401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLC00_RS00880 (ABLC00_00880) - 184445..185209 (-) 765 WP_006581282.1 helix-turn-helix transcriptional regulator -
  ABLC00_RS00885 (ABLC00_00885) - 185231..186445 (-) 1215 WP_004883889.1 MFS transporter -
  ABLC00_RS00890 (ABLC00_00890) - 186580..187233 (+) 654 WP_006581284.1 TetR/AcrR family transcriptional regulator -
  ABLC00_RS00895 (ABLC00_00895) - 187339..188259 (+) 921 WP_079377500.1 DMT family transporter -
  ABLC00_RS00900 (ABLC00_00900) - 188651..189220 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ABLC00_RS00905 (ABLC00_00905) dprA 189271..190401 (-) 1131 WP_033846988.1 DNA-processing protein DprA Machinery gene
  ABLC00_RS00910 (ABLC00_00910) tsaP 190422..191576 (-) 1155 WP_004711032.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ABLC00_RS00915 (ABLC00_00915) def 191699..192229 (+) 531 WP_002054252.1 peptide deformylase -
  ABLC00_RS00920 (ABLC00_00920) - 192266..192694 (+) 429 WP_002054220.1 DUF2946 family protein -
  ABLC00_RS00925 (ABLC00_00925) - 192766..194880 (+) 2115 WP_033846986.1 TonB-dependent copper receptor -
  ABLC00_RS00930 (ABLC00_00930) - 194934..195140 (+) 207 WP_017394259.1 DUF4199 domain-containing protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41779.26 Da        Isoelectric Point: 6.5812

>NTDB_id=1006785 ABLC00_RS00905 WP_033846988.1 189271..190401(-) (dprA) [Acinetobacter nosocomialis strain XH1679]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGTCEKATQPDGLAKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTPDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQQSQNEETNTNTPEIP
VHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1006785 ABLC00_RS00905 WP_033846988.1 189271..190401(-) (dprA) [Acinetobacter nosocomialis strain XH1679]
ATGCTCACCCAACTTTCTTCACACCATTACCACACTCTTAAAGTGTGGTATTTGGTGCAGCACTCATTAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTTTGGGGTTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGCCCGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTGCAACCGCAAATTGCGATTGTCGGCAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTACTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACGGGTACGGGCCTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTGGCAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCTATTCCGGGTCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACAAAGTCAAAATGAAGAAACTAATACGAATACTCCAGAAATTCCT
GTGCATTTGATTGATCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

96.011

100

0.96

  dprA Acinetobacter baumannii D1279779

96.011

100

0.96

  dprA Acinetobacter baylyi ADP1

71.129

100

0.721


Multiple sequence alignment