Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   ABLB96_RS08390 Genome accession   NZ_CP157428
Coordinates   1768483..1769190 (-) Length   235 a.a.
NCBI ID   WP_348896716.1    Uniprot ID   A0AB39JVU0
Organism   Acinetobacter sp. XH1741     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1763483..1774190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS08370 (ABLB96_08375) - 1764556..1765875 (+) 1320 WP_348896720.1 adenylosuccinate synthase -
  ABLB96_RS08375 (ABLB96_08380) - 1765999..1766316 (+) 318 WP_348896719.1 hypothetical protein -
  ABLB96_RS08380 (ABLB96_08385) - 1766433..1767215 (+) 783 WP_348896718.1 M48 family metallopeptidase -
  ABLB96_RS08385 (ABLB96_08390) - 1767274..1768323 (-) 1050 WP_348896717.1 NADP(H)-dependent aldo-keto reductase -
  ABLB96_RS08390 (ABLB96_08395) crp 1768483..1769190 (-) 708 WP_348896716.1 cAMP-activated global transcriptional regulator CRP Regulator
  ABLB96_RS08395 (ABLB96_08400) - 1769455..1769535 (+) 81 Protein_1614 hypothetical protein -
  ABLB96_RS08400 (ABLB96_08405) - 1769630..1770052 (+) 423 WP_001195082.1 OsmC family protein -
  ABLB96_RS08405 (ABLB96_08410) - 1770143..1770571 (+) 429 WP_348896715.1 GNAT family N-acetyltransferase -
  ABLB96_RS08410 (ABLB96_08415) - 1770565..1771371 (-) 807 WP_348896714.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26507.13 Da        Isoelectric Point: 4.6625

>NTDB_id=1006773 ABLB96_RS08390 WP_348896716.1 1768483..1769190(-) (crp) [Acinetobacter sp. XH1741]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDASLEETPVADEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1006773 ABLB96_RS08390 WP_348896716.1 1768483..1769190(-) (crp) [Acinetobacter sp. XH1741]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAATCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGCGAAATTGCTGA
AATTTCTTATGACAATTTTCACGAACTTAGCAAACAATATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTTGTCCGTC
GCTTAAAAAATACAACTCGAAAAATGACTGACCTTGCATTCATTGATGTGTCTGGTCGTATTGCACGTTGCCTAATCGAC
TTATCATCACAGCCAGAGGCAATGATCTTGCCAAATGGTCGTCAAATCCGTATTACTCGTCAAGAAATTGGCCGTATTGT
TGGATGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGCATGATCCAGACAGATGGTAAAGCTA
TTCTGATTTTTGATGCTTCATTAGAAGAAACGCCTGTCGCCGATGAAGACTATGATGATGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

98.723

100

0.987
  crp Vibrio cholerae strain A1552

47.087

87.66

0.413
  crp Haemophilus influenzae Rd KW20

48.718

82.979

0.404

Multiple sequence alignment