Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   GPW48_RS05900 Genome accession   NZ_LR738720
Coordinates   1145252..1145932 (-) Length   226 a.a.
NCBI ID   WP_012775155.1    Uniprot ID   Q8VUP6
Organism   Streptococcus suis isolate GD-0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140252..1150932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW48_RS05865 - 1140422..1140988 (+) 567 WP_015646779.1 CYTH domain-containing protein -
  GPW48_RS05870 - 1141132..1142109 (+) 978 WP_024394121.1 ribose-phosphate diphosphokinase -
  GPW48_RS05875 - 1142120..1143235 (+) 1116 WP_074390258.1 cysteine desulfurase family protein -
  GPW48_RS05880 - 1143237..1143581 (+) 345 WP_002935248.1 DUF1831 domain-containing protein -
  GPW48_RS05885 - 1143583..1143786 (+) 204 WP_012775154.1 DUF4649 family protein -
  GPW48_RS05890 - 1143921..1144559 (+) 639 WP_002935251.1 redox-sensing transcriptional repressor Rex -
  GPW48_RS05895 - 1144563..1145255 (+) 693 WP_012028208.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  GPW48_RS05900 radC 1145252..1145932 (-) 681 WP_012775155.1 RadC family protein Machinery gene
  GPW48_RS05905 - 1146045..1146794 (-) 750 WP_012028210.1 class A sortase -
  GPW48_RS05910 gyrA 1146801..1149245 (-) 2445 WP_012027057.1 DNA gyrase subunit A -
  GPW48_RS05915 - 1149434..1150417 (+) 984 WP_002935259.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25800.99 Da        Isoelectric Point: 7.4771

>NTDB_id=1006773 GPW48_RS05900 WP_012775155.1 1145252..1145932(-) (radC) [Streptococcus suis isolate GD-0001]
MYQIEFKEEAFLPRERLVEVGAERLSNQELLAIFIRTGTKKEPVSILSNKLLNRLESLAALRELSIEELQSLTGIGRVKA
IEIKAMIELGKRINQSELLLNERILGSEKLGRKMIHEIGHKKQEHLVALYLNTQNQIISQKTIFIGSVNRSIAEPREILH
YAVKCMATSIIIVHNHPSGSVQPSRNDLLFTENLKESCEKLGLVLLDHLIVGNKDYYSFREESELF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1006773 GPW48_RS05900 WP_012775155.1 1145252..1145932(-) (radC) [Streptococcus suis isolate GD-0001]
ATGTATCAAATTGAATTTAAAGAAGAGGCCTTTCTACCTAGAGAACGTTTAGTAGAAGTTGGAGCTGAGCGTCTCAGTAA
TCAGGAACTACTAGCAATTTTTATTAGAACTGGGACAAAAAAAGAACCTGTTTCTATTCTCTCCAATAAATTATTGAATC
GTTTGGAGAGTTTAGCGGCTCTAAGAGAACTATCAATTGAAGAATTGCAAAGTTTGACTGGAATTGGGCGCGTCAAGGCG
ATTGAAATTAAGGCTATGATTGAACTTGGAAAACGTATCAATCAATCAGAGCTACTCTTAAATGAGAGAATTTTGGGAAG
TGAGAAGTTGGGACGTAAGATGATTCATGAAATCGGGCATAAGAAGCAGGAGCATCTAGTTGCACTTTATCTCAATACAC
AGAACCAGATTATCAGTCAAAAAACGATTTTTATTGGGAGTGTTAATCGTAGCATTGCAGAACCACGTGAAATTTTGCAT
TACGCAGTAAAATGTATGGCAACATCGATTATCATCGTTCATAACCACCCGTCGGGTTCAGTACAACCTAGTAGGAATGA
TTTGCTATTTACGGAGAATTTAAAAGAGTCCTGCGAAAAGCTAGGACTGGTATTATTAGATCATTTAATTGTTGGAAATA
AGGATTACTATTCTTTTAGAGAAGAAAGTGAGTTATTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(108-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VUP6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

65.044

100

0.65
  radC Streptococcus pneumoniae TIGR4

63.717

100

0.637
  radC Streptococcus pneumoniae R6

63.274

100

0.633
  radC Streptococcus pneumoniae D39

63.274

100

0.633
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

50.463

95.575

0.482

Multiple sequence alignment