Detailed information NTG1006761

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABLB96_RS04315
• Genome accession: NZ_CP157428
• Coordinates: 886073..886933 (-)
• Length: 286 a.a.
• NCBI ID: WP_348896285.1
• Uniprot ID: A0AB39K643
• Organism: Acinetobacter sp. XH1741
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 881073..891933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABLB96_RS04290 (ABLB96_04295)	-	881963..883273 (+)	1311	WP_348896290.1	tetratricopeptide repeat protein	-
ABLB96_RS04295 (ABLB96_04300)	-	883350..883676 (+)	327	WP_348896289.1	pyrimidine/purine nucleoside phosphorylase	-
ABLB96_RS04300 (ABLB96_04305)	rlmB	883779..884528 (+)	750	WP_348896288.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABLB96_RS04305 (ABLB96_04310)	-	884564..885478 (+)	915	WP_348896287.1	DMT family transporter	-
ABLB96_RS04310 (ABLB96_04315)	coaE	885475..886071 (-)	597	WP_348896286.1	dephospho-CoA kinase	-
ABLB96_RS04315 (ABLB96_04320)	pilD	886073..886933 (-)	861	WP_348896285.1	A24 family peptidase	Machinery gene
ABLB96_RS04320 (ABLB96_04325)	pilC	886933..888159 (-)	1227	WP_348896283.1	type II secretion system F family protein	Machinery gene
ABLB96_RS04325 (ABLB96_04330)	pilB	888187..889899 (-)	1713	WP_348896282.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABLB96_RS04330 (ABLB96_04335)	tpiA	890190..890984 (+)	795	WP_348896280.1	triose-phosphate isomerase	-
ABLB96_RS04335 (ABLB96_04340)	secG	890997..891326 (+)	330	WP_348896279.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32077.49 Da
• Isoelectric Point: 7.1786

>NTDB_id=1006761 ABLB96_RS04315 WP_348896285.1 886073..886933(-) (pilD) [Acinetobacter sp. XH1741]
MQEIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPVIDHAKLTLSKPASSCPECHHP
IRWYQNIPVISWLVLRGKCGQCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLWGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=1006761 ABLB96_RS04315 WP_348896285.1 886073..886933(-) (pilD) [Acinetobacter sp. XH1741]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTCTATATTGCAGTTGCACTTGTGAGCCTATGTATTGG
TAGCTTCCTGAATGTGGTGATTTATCGCACGCCAAAAATGATGGAACAAGACTGGCAGCAAGAATGCCAAATGCTACTCA
ACCCTGAGCAGCCTGTTATTGACCATGCAAAGCTGACATTAAGTAAGCCTGCTTCATCATGTCCTGAGTGCCACCACCCC
ATTCGTTGGTATCAAAACATTCCTGTCATAAGCTGGCTAGTGTTAAGAGGAAAGTGCGGGCAATGTCAGCACCCGATTAG
CATACGTTATCCAGCTGTTGAACTACTTACCATGCTATGTTCACTGGTAGTGGTCATGGTATTTGGCCCAACTATACAAA
TGCTTTGGGGACTCGTTCTTACCTGGGTACTAATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCCGATCGC
TTTACCTTACCTTTGGCTGCACTCGGCTTAGGCATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCGATTTGGGG
ATATTTAATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAGTTACTTGCAGCTTTAGGGGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTATTAAAGTTACGTAATGAAAATCAGCCTTTTGCTTTTGGACCATATATTGCGAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	52.03	94.755	0.493
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.183	91.608	0.423