Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABLB96_RS03845 Genome accession   NZ_CP157428
Coordinates   790742..792163 (-) Length   473 a.a.
NCBI ID   WP_348896963.1    Uniprot ID   -
Organism   Acinetobacter sp. XH1741     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 785742..797163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS03830 (ABLB96_03830) lptG 786797..787867 (+) 1071 WP_348896960.1 LPS export ABC transporter permease LptG -
  ABLB96_RS03835 (ABLB96_03835) gpmI 787991..789538 (+) 1548 WP_348896961.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLB96_RS03840 (ABLB96_03840) - 789554..790738 (+) 1185 WP_348896962.1 S41 family peptidase -
  ABLB96_RS03845 (ABLB96_03845) pilR 790742..792163 (-) 1422 WP_348896963.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB96_RS03850 (ABLB96_03850) pilS 792188..793756 (-) 1569 WP_348896964.1 PAS domain-containing sensor histidine kinase Regulator
  ABLB96_RS03855 (ABLB96_03855) - 793767..794402 (-) 636 WP_000633799.1 response regulator -
  ABLB96_RS03860 (ABLB96_03860) pbpG 794614..795660 (+) 1047 WP_348896965.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB96_RS03865 (ABLB96_03865) thrC 795770..796909 (-) 1140 WP_111855727.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53066.32 Da        Isoelectric Point: 6.7803

>NTDB_id=1006757 ABLB96_RS03845 WP_348896963.1 790742..792163(-) (pilR) [Acinetobacter sp. XH1741]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPVNQVHLDQLLQKALNRQKTDHDFVETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWATPPKQLTDAAETYLLQQHFPGNVRELRNMIERAITLSDDAKIDIPHLHPAPLRANISNSISSVCET
IPNAVTAPQAVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1006757 ABLB96_RS03845 WP_348896963.1 790742..792163(-) (pilR) [Acinetobacter sp. XH1741]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAGGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGCT
TAACCGATTTAAACCTTCCCGATGGGAGTGGATTAGACTTAGTCAAACATGTCTCTCAAAATTACACTAATACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGTGCTTTTGATTTTGTAAATAAACC
CGTCAATCAAGTTCATTTAGATCAATTACTGCAAAAGGCACTCAATCGGCAAAAAACCGATCATGATTTTGTAGAAACTG
CATTAGAAAATAAATTATTAATTGGTCGTTCTCTGCCTATCCAACAGTTACGTATCGCGATTAAAAAAATTGCCCGCTCT
CAAGCACCGGTATTTGTTACTGGTGAATCCGGAACTGGTAAAGAAGTCGTTGCCAATCTGGTTCATCGCCTTAGTAATCG
TAGTGAAGGACCTTTTATCGCGATTAACTGTGGTGCTATTCCAACTGAACTGATGGAAAGCGAATTGTTTGGGCATAAAA
AAGGAAGCTTTACTGGCGCGACTCAAGATAAACAAGGCCTAATTTTATCCGCACACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTGAGCATGCAAGTCAAACTGCTCCGTGCAGTACAGGAAAAAAAGATTCGTCCTGTCGGTTCTGA
CCAAGAGATAGATGTTGATTTTCGTGTGATCAGTGCCAGTCATCAAGACTTGGATTTACTGGTTCGGCAAGGCAAATTCC
GTCAGGATCTATTCTTCCGTATCCATGTAATGGATCTGATATTGCCACCTTTACGCGAACGTGGTGAAGATGTTCTTTTA
CTTGCAAACCACTTCATCCAAAAAATTTGTATGGAATGGGCAACGCCGCCCAAACAATTAACCGATGCAGCTGAAACGTA
CCTGCTACAGCAACACTTTCCGGGCAATGTTCGCGAATTAAGAAATATGATTGAGCGGGCAATTACCTTAAGTGATGATG
CCAAGATTGATATACCTCATTTACATCCAGCTCCGCTAAGAGCCAATATCTCTAACTCCATATCATCGGTATGTGAAACT
ATACCAAACGCTGTAACTGCGCCTCAGGCTGTAAAAAAATTACCAACTGAAGGGCTAGAACGCTATTTAGAGAATATTGA
AAAAGATATTTTGCTCAATGCACTCAACATGACCCACTGGAATCGAACCTTAGCAGCTAAAAAACTAGGAATGACTTTCC
GTTCTTTACGCTACCGTTTGAAGAAATTTGGGTTAGATACTGAAACCGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

94.926

100

0.949
  pilR Pseudomonas aeruginosa PAK

50.109

97.04

0.486

Multiple sequence alignment