Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ABLB96_RS03850 Genome accession   NZ_CP157428
Coordinates   792188..793756 (-) Length   522 a.a.
NCBI ID   WP_348896964.1    Uniprot ID   A0AB39K661
Organism   Acinetobacter sp. XH1741     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 787188..798756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB96_RS03835 (ABLB96_03835) gpmI 787991..789538 (+) 1548 WP_348896961.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABLB96_RS03840 (ABLB96_03840) - 789554..790738 (+) 1185 WP_348896962.1 S41 family peptidase -
  ABLB96_RS03845 (ABLB96_03845) pilR 790742..792163 (-) 1422 WP_348896963.1 sigma-54 dependent transcriptional regulator Regulator
  ABLB96_RS03850 (ABLB96_03850) pilS 792188..793756 (-) 1569 WP_348896964.1 PAS domain-containing sensor histidine kinase Regulator
  ABLB96_RS03855 (ABLB96_03855) - 793767..794402 (-) 636 WP_000633799.1 response regulator -
  ABLB96_RS03860 (ABLB96_03860) pbpG 794614..795660 (+) 1047 WP_348896965.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABLB96_RS03865 (ABLB96_03865) thrC 795770..796909 (-) 1140 WP_111855727.1 threonine synthase -
  ABLB96_RS03870 (ABLB96_03870) - 796965..798266 (-) 1302 WP_348896966.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59199.61 Da        Isoelectric Point: 6.0115

>NTDB_id=1006758 ABLB96_RS03850 WP_348896964.1 792188..793756(-) (pilS) [Acinetobacter sp. XH1741]
MQFPLNSSLSHTIFRLGNWYGLYRLIIAVSLNIILVLTNAQTDNSLQQPSLYFYTLLGYSILSLLQLLCFKFIATQATRQ
LILFFIVDIICLSLLTFSVGEPNLQISLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSFFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVVSNPAACSLLGIPPQFANE
KYPLAKWHADLFEILKLGDLQEGDRFIFESQLSAYSINIKVQHLLVPQHALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDQEQQNTLRHMIGKQTKRIDSIVQDTLGLARSERTHPIQIELSEFINSLFEEDLSDVK
HCIELKISNDSLKLLFDEKQLRQVMINLVRNALRHNAPDSPDVMINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=1006758 ABLB96_RS03850 WP_348896964.1 792188..793756(-) (pilS) [Acinetobacter sp. XH1741]
ATGCAATTTCCCTTAAACTCATCCTTGTCCCATACGATTTTTCGTTTGGGCAACTGGTATGGTTTATATCGTCTGATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCAATGCTCAAACCGATAACAGTTTGCAGCAACCTTCTTTATATTTTT
ATACTCTACTCGGCTATTCAATCTTAAGCCTTCTTCAGTTGCTATGCTTTAAATTTATTGCGACTCAAGCGACACGGCAG
CTTATTTTATTTTTTATTGTCGACATTATTTGTTTGAGTTTACTAACTTTTTCTGTCGGTGAACCAAATTTACAAATCAG
CCTGCTTTATGTAATTGCAATCTTTACTTCGGCAATTTTGCTCAGTGCAAGAATGTCTTTGCTCATTACATTACTTGCTG
TGATTGCTGTGATTTACCAACGATTTGTTGGTAGCTTTTTTGACTACAACAACCTCAATACGATTGGTAATAGTGCCCTA
TTGGCCTTCTTATTTTTTGTAGTGCATGGTATTGGTCAAATTGCAGTTCAGCGCTTTAAACTACTCGAAGCACTCACTTT
CCATCAGTCGATCGAACTTTATCAACTTCAAAATATCAATCGTTATATTTTAGAACAAATCGAAGAAGGCTATTTAGTTT
TAGATGAAAATTATGACATTGTGGTAAGCAATCCGGCAGCCTGTTCATTGCTTGGTATTCCTCCGCAATTTGCCAATGAA
AAATATCCTTTAGCTAAATGGCATGCAGATTTATTTGAAATTCTTAAGTTGGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAATCTCAGCTTTCAGCCTACTCTATCAATATTAAAGTACAACACCTATTGGTGCCCCAACACGCATTAACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAGCAGCTCAAACTTGCCGCCTTAGGACAACTCTCAGCAAGC
ATTGCTCACGAAATTCGTAATCCTCTTGCTGCAATTGTACAAGCAAATGAGTTACTTAAAGATAGCGATCAAGAGCAACA
AAACACTTTACGCCATATGATTGGTAAACAAACCAAGCGTATCGATAGTATTGTTCAAGATACTCTAGGACTTGCCCGCA
GCGAAAGAACTCATCCCATCCAAATTGAATTAAGTGAATTCATAAATAGCTTATTCGAAGAAGATTTATCTGACGTTAAA
CATTGTATCGAACTCAAAATTTCTAATGACTCTTTAAAACTTTTATTTGACGAAAAACAATTACGACAAGTCATGATCAA
TCTGGTTCGAAATGCTTTAAGACATAATGCACCTGATTCACCCGATGTCATGATCAATATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-254)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.061

100

0.941

Multiple sequence alignment